PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Traes_3AL_0BDB63436.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
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Family | AP2 | ||||||||
Protein Properties | Length: 36aa MW: 4418.89 Da PI: 11.7264 | ||||||||
Description | AP2 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 24.6 | 6.1e-08 | 5 | 27 | 1 | 22 |
AP2 1 sgykGVrwdkkrgrWvAeIrd.p 22 s y+GV++++++gr++A+++d Traes_3AL_0BDB63436.1 5 SIYRGVTRHRWTGRYEAHLWDnS 27 67*****************9933 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF54171 | 9.15E-5 | 5 | 30 | IPR016177 | DNA-binding domain |
Pfam | PF00847 | 1.5E-5 | 5 | 30 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 36 aa Download sequence Send to blast |
GQRTSIYRGV TRHRWTGRYE AHLWDNSCRR EGQTRK |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). Involved in the regulation of floral organs size. {ECO:0000250, ECO:0000269|PubMed:15988559}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_003610101.2 | 5e-19 | AP2-like ethylene-responsive transcription factor AIL5 | ||||
Refseq | XP_010277520.1 | 5e-19 | PREDICTED: AP2-like ethylene-responsive transcription factor AIL6 isoform X1 | ||||
Refseq | XP_019055717.1 | 5e-19 | PREDICTED: AP2-like ethylene-responsive transcription factor AIL6 isoform X1 | ||||
Refseq | XP_019055718.1 | 5e-19 | PREDICTED: AP2-like ethylene-responsive transcription factor AIL6 isoform X2 | ||||
Swissprot | Q6PQQ3 | 6e-20 | AIL5_ARATH; AP2-like ethylene-responsive transcription factor AIL5 | ||||
TrEMBL | A0A371E0A7 | 6e-18 | A0A371E0A7_MUCPR; AP2-like ethylene-responsive transcription factor AIL6 (Fragment) | ||||
TrEMBL | A0A3S3Q2B2 | 6e-18 | A0A3S3Q2B2_9MAGN; AP2-like protein ethylene-responsive transcription factor AIL6 | ||||
TrEMBL | A0A427AHU0 | 6e-18 | A0A427AHU0_ENSVE; Uncharacterized protein | ||||
STRING | XP_006491760.1 | 2e-19 | (Citrus sinensis) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G57390.1 | 3e-22 | AINTEGUMENTA-like 5 |
Publications ? help Back to Top | |||
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