PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Traes_2DS_FE62DB7F5.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
Family bHLH
Protein Properties Length: 264aa    MW: 28890.5 Da    PI: 5.0683
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Traes_2DS_FE62DB7F5.1genomeIWGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH14.37.6e-054489554
                           HHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
                    HLH  5 hnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54
                           + erE+  Rd +N+ f+eL e+l  +     + + Ka iL+ +++ +++L
  Traes_2DS_FE62DB7F5.1 44 KAEREKHKRDLLNDLFSELGEMLEAD----RQTNGKACILTDTTRILRDL 89
                           579********************997....57788888998888887776 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF474592.62E-1037109IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS508889.8073989IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.105.8E-844108IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 264 aa     Download sequence    Send to blast
MVAMLPAARG DAAPAASAGA AEKLLHGPLA DGKCKKKAPR MIHKAEREKH KRDLLNDLFS  60
ELGEMLEADR QTNGKACILT DTTRILRDLL SQLESLRKEN STLQNESHYV TMERNELQDE  120
NSVLRNEILE LQKELTMPHA VSHSANTVFP SQQPMQPATI ASAVFPLQQP LLQTTILEHP  180
YAPPPPPREL KLFPDAASDV EGLEPSEDPE ATNHITRPLA RYPTESASWP VTVSLGLPRM  240
EDEQCSSGTT GSSNEGSSSA SSRD
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor that plays a positive role in salt stress tolerance. Interacts with TIFY11A/JAZ9 and binds to the promoter of some potassium ion transporter genes to regulate potassium homeostasis during salt stress. {ECO:0000269|PubMed:25617318}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKJ5342740.0KJ534274.1 Triticum aestivum isolate Ta_IRO3_1 putative transcription factor bHLH mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020175951.10.0transcription factor bHLH47-like
SwissprotQ69V101e-73BH062_ORYSJ; Transcription factor BHLH062
TrEMBLA0A1D5V1040.0A0A1D5V104_WHEAT; Uncharacterized protein
TrEMBLA0A453AIU70.0A0A453AIU7_AEGTS; Uncharacterized protein
TrEMBLR7WCP30.0R7WCP3_AEGTA; Transcription factor bHLH47
TrEMBLW5CA260.0W5CA26_WHEAT; Putative transcription factor bHLH
STRINGEMT163140.0(Aegilops tauschii)
STRINGTraes_2DS_FE62DB7F5.10.0(Triticum aestivum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP24813884
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G47640.32e-23bHLH family protein
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]
  2. Yilmaz A, et al.
    GRASSIUS: a platform for comparative regulatory genomics across the grasses.
    Plant Physiol., 2009. 149(1): p. 171-80
    [PMID:18987217]
  3. Brenchley R, et al.
    Analysis of the bread wheat genome using whole-genome shotgun sequencing.
    Nature, 2012. 491(7426): p. 705-10
    [PMID:23192148]
  4. Wu H,Ye H,Yao R,Zhang T,Xiong L
    OsJAZ9 acts as a transcriptional regulator in jasmonate signaling and modulates salt stress tolerance in rice.
    Plant Sci., 2015. 232: p. 1-12
    [PMID:25617318]