PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Traes_2DS_FE62DB7F5.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
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Family | bHLH | ||||||||
Protein Properties | Length: 264aa MW: 28890.5 Da PI: 5.0683 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 14.3 | 7.6e-05 | 44 | 89 | 5 | 54 |
HHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS HLH 5 hnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 + erE+ Rd +N+ f+eL e+l + + + Ka iL+ +++ +++L Traes_2DS_FE62DB7F5.1 44 KAEREKHKRDLLNDLFSELGEMLEAD----RQTNGKACILTDTTRILRDL 89 579********************997....57788888998888887776 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF47459 | 2.62E-10 | 37 | 109 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
PROSITE profile | PS50888 | 9.807 | 39 | 89 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene3D | G3DSA:4.10.280.10 | 5.8E-8 | 44 | 108 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 264 aa Download sequence Send to blast |
MVAMLPAARG DAAPAASAGA AEKLLHGPLA DGKCKKKAPR MIHKAEREKH KRDLLNDLFS 60 ELGEMLEADR QTNGKACILT DTTRILRDLL SQLESLRKEN STLQNESHYV TMERNELQDE 120 NSVLRNEILE LQKELTMPHA VSHSANTVFP SQQPMQPATI ASAVFPLQQP LLQTTILEHP 180 YAPPPPPREL KLFPDAASDV EGLEPSEDPE ATNHITRPLA RYPTESASWP VTVSLGLPRM 240 EDEQCSSGTT GSSNEGSSSA SSRD |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor that plays a positive role in salt stress tolerance. Interacts with TIFY11A/JAZ9 and binds to the promoter of some potassium ion transporter genes to regulate potassium homeostasis during salt stress. {ECO:0000269|PubMed:25617318}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | KJ534274 | 0.0 | KJ534274.1 Triticum aestivum isolate Ta_IRO3_1 putative transcription factor bHLH mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_020175951.1 | 0.0 | transcription factor bHLH47-like | ||||
Swissprot | Q69V10 | 1e-73 | BH062_ORYSJ; Transcription factor BHLH062 | ||||
TrEMBL | A0A1D5V104 | 0.0 | A0A1D5V104_WHEAT; Uncharacterized protein | ||||
TrEMBL | A0A453AIU7 | 0.0 | A0A453AIU7_AEGTS; Uncharacterized protein | ||||
TrEMBL | R7WCP3 | 0.0 | R7WCP3_AEGTA; Transcription factor bHLH47 | ||||
TrEMBL | W5CA26 | 0.0 | W5CA26_WHEAT; Putative transcription factor bHLH | ||||
STRING | EMT16314 | 0.0 | (Aegilops tauschii) | ||||
STRING | Traes_2DS_FE62DB7F5.1 | 0.0 | (Triticum aestivum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP2481 | 38 | 84 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G47640.3 | 2e-23 | bHLH family protein |
Publications ? help Back to Top | |||
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