PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Traes_2DS_E1537CBD1.1
Organism
Triticum aestivum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
Family C2H2
Protein Properties Length: 306aa    MW: 34839.9 Da    PI: 9.2075
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Traes_2DS_E1537CBD1.1genomeIWGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H212.60.00043163187123
                            EEETTTTEEESSHHHHHHHHHH..T CS
                zf-C2H2   1 ykCpdCgksFsrksnLkrHirt..H 23 
                            + C+ C+k ++  +++++H+++  H
  Traes_2DS_E1537CBD1.1 163 FFCNLCNKQYKLAYEFESHLSSydH 187
                            67*****************987666 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004432.4E-1865111IPR000467G-patch domain
PROSITE profilePS5017417.86267113IPR000467G-patch domain
PfamPF015851.9E-1768109IPR000467G-patch domain
SuperFamilySSF576672.17E-5146198No hitNo description
PROSITE patternPS000280165187IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 306 aa     Download sequence    Send to blast
MENRSYHGGI GSGSKNPPPS GKEGEYGGGY DRLDEEVEFR LPRGHRPVEN LDTEGLEQAS  60
VDTRLAASNV GFRLLQKMGW KSGKGLGKNE QGILEPIKAG IRDAKLGVGK QEQDDFFTAE  120
DNVQRKRLNV ELEETEEHIK KREVTAEREQ KIRSEVKEIQ KTFFCNLCNK QYKLAYEFES  180
HLSSYDHNHR KRFKEMKEMQ SGGSGNRDDR QKREQQREEK ELAKFAQLAD AHRKQQKEKQ  240
EQPEISGEQA TPKNMPTPGN QDQRRTLKFG FSKMTPSKAP VGNMSKKPKI ATKVPSVFGN  300
DSDEEA
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK2488230.0AK248823.1 Hordeum vulgare subsp. vulgare cDNA clone: FLbaf8m08, mRNA sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020166155.10.0G patch domain-containing protein 8
TrEMBLA0A453A6Q00.0A0A453A6Q0_AEGTS; Uncharacterized protein
TrEMBLW5C9670.0W5C967_WHEAT; Uncharacterized protein
STRINGTraes_2DS_E1537CBD1.10.0(Triticum aestivum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP1017579
Publications ? help Back to Top
  1. Brenchley R, et al.
    Analysis of the bread wheat genome using whole-genome shotgun sequencing.
    Nature, 2012. 491(7426): p. 705-10
    [PMID:23192148]