PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Traes_2DS_D05DC56BD.2 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
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Family | CAMTA | ||||||||
Protein Properties | Length: 987aa MW: 109710 Da PI: 5.9058 | ||||||||
Description | CAMTA family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | CG-1 | 178.9 | 6.1e-56 | 21 | 136 | 3 | 117 |
CG-1 3 ke.kkrwlkneeiaaiLenfekheltlelktrpksgsliLynrkkvryfrkDGyswkkkkdgktvrEdhekLKvggvevlycyYahse 89 +e ++rwl+++ei++iL n++k++++ e+++rp+sgsl+L++rk++ryfrkDG+ w+kkkdgktv+E+hekLKvg+v+vl+cyYah+e Traes_2DS_D05DC56BD.2 21 QEaQNRWLRPTEICQILSNYKKFSIAPEPPNRPPSGSLFLFDRKILRYFRKDGHIWRKKKDGKTVKEAHEKLKVGSVDVLHCYYAHGE 108 5559************************************************************************************ PP CG-1 90 enptfqrrcywlLeeelekivlvhylev 117 en++fqrr+ywlLee + +ivlvhyle Traes_2DS_D05DC56BD.2 109 ENENFQRRTYWLLEEGFMNIVLVHYLEI 136 *************************986 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51437 | 81.103 | 16 | 142 | IPR005559 | CG-1 DNA-binding domain |
SMART | SM01076 | 3.2E-77 | 19 | 137 | IPR005559 | CG-1 DNA-binding domain |
Pfam | PF03859 | 2.0E-50 | 22 | 135 | IPR005559 | CG-1 DNA-binding domain |
Gene3D | G3DSA:2.60.40.10 | 1.5E-7 | 396 | 483 | IPR013783 | Immunoglobulin-like fold |
SuperFamily | SSF81296 | 5.13E-18 | 397 | 482 | IPR014756 | Immunoglobulin E-set |
Pfam | PF01833 | 2.7E-7 | 397 | 470 | IPR002909 | IPT domain |
SuperFamily | SSF48403 | 2.21E-13 | 574 | 690 | IPR020683 | Ankyrin repeat-containing domain |
CDD | cd00204 | 1.88E-10 | 575 | 688 | No hit | No description |
Gene3D | G3DSA:1.25.40.20 | 2.6E-13 | 578 | 691 | IPR020683 | Ankyrin repeat-containing domain |
PROSITE profile | PS50297 | 15.247 | 595 | 690 | IPR020683 | Ankyrin repeat-containing domain |
SuperFamily | SSF52540 | 3.45E-8 | 800 | 853 | IPR027417 | P-loop containing nucleoside triphosphate hydrolase |
SMART | SM00015 | 1.5 | 802 | 824 | IPR000048 | IQ motif, EF-hand binding site |
PROSITE profile | PS50096 | 8.627 | 804 | 832 | IPR000048 | IQ motif, EF-hand binding site |
Pfam | PF00612 | 0.0053 | 804 | 823 | IPR000048 | IQ motif, EF-hand binding site |
SMART | SM00015 | 0.0022 | 825 | 847 | IPR000048 | IQ motif, EF-hand binding site |
PROSITE profile | PS50096 | 9.67 | 826 | 850 | IPR000048 | IQ motif, EF-hand binding site |
Pfam | PF00612 | 6.2E-5 | 827 | 847 | IPR000048 | IQ motif, EF-hand binding site |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0005515 | Molecular Function | protein binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 987 aa Download sequence Send to blast |
RGDLGLRLRA IPLGYIPQIL QEAQNRWLRP TEICQILSNY KKFSIAPEPP NRPPSGSLFL 60 FDRKILRYFR KDGHIWRKKK DGKTVKEAHE KLKVGSVDVL HCYYAHGEEN ENFQRRTYWL 120 LEEGFMNIVL VHYLEIKGGK QSFSRSKEAE DSPACSNSFA SQSQVASQTM DAESPYSGQI 180 SEYEDAETGY QDENQARTAN ISNNFVTHHG IASVFNDVGA GLRSGSKTAL DSVHFGEPFP 240 EYPTGFTEPT LYSSVTTMGS NNLDDNSRLE TLMTEALYTN NLTQKETDAL SAAGMTSSQV 300 HNDSYTDGSM GYPLLKQSSL DLFKIEPNGL KKFDSFSKWM SDELAADLDI KSTSDAFWSS 360 TETVNVADGS SMSIPMNEQL DAYVVSPSLS QDQLFSIIDV SPSWAYTGSQ NKVLITGTFL 420 TNKEHVENCK WSCMFGDVEV PVEVLADGSL RCYTPVHQSG RVPFYVTCSN RVACSEVREF 480 EFHDSETQHM EAADPHITGI NEMHLHIRLE KLLSLGPDDY EKYVMSGGNE KSELISTIGS 540 LMLDDKFTNL SAPSDEEFSA AQDKNLEKSV KDKLYYWLIH KIHDDGKGPN VLGKEGQGVI 600 HLVAALGYDW AIRPIIAAGV HVNFRDVRGW TALHWAACLL FRERTVGALI TNGAAAGALT 660 DPTPHFLSGR TPADLASDNG HKGIAGFLAE SALTSHLSAL TLKEAKGCNV EEICGSAEAD 720 GFAEPSSAQL SRQDSQAESL KDSLSAVRKS TLAASKIFQA FRVESFHRKK VVEYGDDDCG 780 LSDERTLSLV SLKNTKSGQN DMPHSAAVRI QNKFRGWKGR KEFMIIRQKI IKIQAHIRGH 840 QVRRNYKKVI WSVGIVEKVI LRWRRKGRGL RGFQPDKQLE GPSSQIQPAE GGSAEAEDEY 900 DFLKDGRKQA EGRLQRSLAR VKSMTQYPEA REQYSRLQAC VTELQESKAI QDKMLSDAAG 960 GDGGDFMVDL EDLCADELLD TPMSTIL |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_020196708.1 | 0.0 | calmodulin-binding transcription activator 2-like isoform X1 | ||||
TrEMBL | A0A453B212 | 0.0 | A0A453B212_AEGTS; Uncharacterized protein | ||||
STRING | Traes_2DS_D05DC56BD.2 | 0.0 | (Triticum aestivum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP608 | 38 | 140 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G09410.2 | 0.0 | ethylene induced calmodulin binding protein |
Publications ? help Back to Top | |||
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