PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Traes_2DS_CCA2FCCAD.1
Organism
Triticum aestivum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
Family GRAS
Protein Properties Length: 408aa    MW: 45282.9 Da    PI: 6.3274
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Traes_2DS_CCA2FCCAD.1genomeIWGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS434.96e-133384071373
                   GRAS   1 lvelLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevs 88 
                            l+elLl+cA+av+++++ +++ ++ +l++++s +g+p++Rl ay++e+L arla+s++++ykal+++e +   ss+ l+++++++e++
  Traes_2DS_CCA2FCCAD.1  38 LKELLLACARAVEEKNMYAVDVMVPELRKMVSVSGTPLERLGAYMVEGLVARLASSGHSIYKALRCKEPK---SSDLLSYMHFLYEAC 122
                            5799*****************************************************************9...9************** PP

                   GRAS  89 PilkfshltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesg..skeeleetgerLakfAeelgv 174
                            P++kf+++ aN aI eav+ge+r+HiiDf i qG+QW++LlqaLa+Rp+gpp++RiTg+++  s   +   l  +g+rL+++A  ++v
  Traes_2DS_CCA2FCCAD.1 123 PYFKFGYMSANGAIAEAVKGEDRIHIIDFHIAQGAQWISLLQALAARPGGPPTVRITGIDDTVSAyaRGGGLDLVGRRLSHIAGLCKV 210
                            *************************************************************888899999****************** PP

                   GRAS 175 pfefnvlvakrledleleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerfleale 262
                            pfef+  va + e++e  +L v pgEal Vn+ l+lh+++de+vs++++rd++L+lvk+l+P+v+++veqe+++n+++F +rf+e+le
  Traes_2DS_CCA2FCCAD.1 211 PFEFHS-VAMAGEEVEEGHLGVVPGEALTVNFTLELHHIPDETVSTANHRDRILRLVKGLRPRVLTLVEQESNTNTAPFPQRFAETLE 297
                            ******.7999***************************************************************************** PP

                   GRAS 263 yysalfdsleaklpreseerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyr 350
                            yy+a+f+s++ +lpr+++er+++E+++l+re+vn++acegaer+erhe ++kW++rl++aGF+p pls+ +++++++ll+ ++++ y+
  Traes_2DS_CCA2FCCAD.1 298 YYTAIFESIDLTLPRDDRERVNMEQHCLAREVVNLIACEGAERVERHEVFGKWKARLTMAGFRPSPLSSLVNATISTLLQSYSEN-YK 384
                            ***********************************************************************************55.** PP

                   GRAS 351 veeesgslvlgWkdrpLvsvSaW 373
                            + e++g+l+lgWk++pLv+ SaW
  Traes_2DS_CCA2FCCAD.1 385 LAERDGALYLGWKSKPLVVSSAW 407
                            *********************** PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098569.17112389IPR005202Transcription factor GRAS
PfamPF035142.1E-13038407IPR005202Transcription factor GRAS
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
Sequence ? help Back to Top
Protein Sequence    Length: 408 aa     Download sequence    Send to blast
MLGPDAETVN SLESSVAKQL SLEPEKWAQM MDFPRGDLKE LLLACARAVE EKNMYAVDVM  60
VPELRKMVSV SGTPLERLGA YMVEGLVARL ASSGHSIYKA LRCKEPKSSD LLSYMHFLYE  120
ACPYFKFGYM SANGAIAEAV KGEDRIHIID FHIAQGAQWI SLLQALAARP GGPPTVRITG  180
IDDTVSAYAR GGGLDLVGRR LSHIAGLCKV PFEFHSVAMA GEEVEEGHLG VVPGEALTVN  240
FTLELHHIPD ETVSTANHRD RILRLVKGLR PRVLTLVEQE SNTNTAPFPQ RFAETLEYYT  300
AIFESIDLTL PRDDRERVNM EQHCLAREVV NLIACEGAER VERHEVFGKW KARLTMAGFR  360
PSPLSSLVNA TISTLLQSYS ENYKLAERDG ALYLGWKSKP LVVSSAWH
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5hyz_A1e-65424088375GRAS family transcription factor containing protein, expressed
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtMay play a regulatory role in the early step of oligosaccharide elicitor response, downstream of the membrane-associated high-affinity chitin-binding protein. {ECO:0000269|PubMed:12591613}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By oligosaccharide elicitor (N-Acetylchitooligosaccharide) extracted from the rice blast fungus (M.grisea) cell wall. Strongest induction by chitin oligomer with greater degree of polymerization (heptamer). By inoculation of M.grisea in rice cell suspension culture. {ECO:0000269|PubMed:12591613}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK3641790.0AK364179.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv2022G24.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020176499.10.0chitin-inducible gibberellin-responsive protein 2-like
SwissprotQ8GVE10.0CIGR2_ORYSJ; Chitin-inducible gibberellin-responsive protein 2
TrEMBLA0A1D5V0L10.0A0A1D5V0L1_WHEAT; Uncharacterized protein
TrEMBLA0A453B7K00.0A0A453B7K0_AEGTS; Uncharacterized protein
STRINGEMT218600.0(Aegilops tauschii)
STRINGTraes_2DS_CCA2FCCAD.10.0(Triticum aestivum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP151337117
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G50600.11e-179scarecrow-like 5
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]
  2. Day RB, et al.
    Two rice GRAS family genes responsive to N -acetylchitooligosaccharide elicitor are induced by phytoactive gibberellins: evidence for cross-talk between elicitor and gibberellin signaling in rice cells.
    Plant Mol. Biol., 2004. 54(2): p. 261-72
    [PMID:15159627]
  3. Brenchley R, et al.
    Analysis of the bread wheat genome using whole-genome shotgun sequencing.
    Nature, 2012. 491(7426): p. 705-10
    [PMID:23192148]
  4. Tanabe S, et al.
    The elicitor-responsive gene for a GRAS family protein, CIGR2, suppresses cell death in rice inoculated with rice blast fungus via activation of a heat shock transcription factor, OsHsf23.
    Biosci. Biotechnol. Biochem., 2016. 80(1): p. 145-51
    [PMID:26287768]