PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Traes_2DS_C9D25868F.1
Organism
Triticum aestivum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
Family MYB_related
Protein Properties Length: 98aa    MW: 11789.4 Da    PI: 10.3655
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Traes_2DS_C9D25868F.1genomeIWGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding28.92.7e-094695147
                           TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHT...TTS-HHHHHHHHHHH CS
        Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmg...kgRtlkqcksrwqky 47
                           r++WT+  +  l+++v ++G g+Wk I    +   + R+  + k++++++
  Traes_2DS_C9D25868F.1 46 RKKWTEIQERTLIEGVDKYGRGNWKDIKIAYPdvfQDRSTVDMKDKFRNL 95
                           799********************************************997 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129410.1454198IPR017930Myb domain
SuperFamilySSF466893.73E-134495IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.605.5E-104495IPR009057Homeodomain-like
SMARTSM007171.9E-44598IPR001005SANT/Myb domain
PfamPF002494.5E-84695IPR001005SANT/Myb domain
CDDcd116602.49E-164795No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 98 aa     Download sequence    Send to blast
MERKPSAIVY QWDSGDSDSE RPPHQRRLPN YERKMRPPPA VPYKTRKKWT EIQERTLIEG  60
VDKYGRGNWK DIKIAYPDVF QDRSTVDMKD KFRNLGRH
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020158353.19e-67uncharacterized protein LOC109743674
TrEMBLA0A3B6D9I22e-65A0A3B6D9I2_WHEAT; Uncharacterized protein
STRINGTraes_2AS_87EF37490.15e-66(Triticum aestivum)
STRINGTraes_2DS_C9D25868F.15e-67(Triticum aestivum)
STRINGTRIUR3_12694-P14e-66(Triticum urartu)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP139982224
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G15720.19e-12TRF-like 5
Publications ? help Back to Top
  1. Brenchley R, et al.
    Analysis of the bread wheat genome using whole-genome shotgun sequencing.
    Nature, 2012. 491(7426): p. 705-10
    [PMID:23192148]