PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | Traes_2DS_C83B7F5CF.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
|
||||||||
Family | FAR1 | ||||||||
Protein Properties | Length: 712aa MW: 81620.7 Da PI: 7.4745 | ||||||||
Description | FAR1 family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | GATA | 43.9 | 3.3e-14 | 45 | 81 | 1 | 35 |
GATA 1 CsnCgttk..TplWRrgpdgnktLCnaCGlyyrkkgl 35 C Cg + Tp++Rrgpdg++tLCnaCG+ yrk ++ Traes_2DS_C83B7F5CF.1 45 CLRCGISGnaTPHMRRGPDGPRTLCNACGIAYRKGKM 81 5667777777************************876 PP | |||||||
2 | FAR1 | 83.7 | 3e-26 | 115 | 202 | 1 | 91 |
FAR1 1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHe 88 +fYn+YA +vGFsvrks+s+ks++n ++ rtfvCs+eg+++++k+ +++++r tr+gC a+l +k + + k++vt+++ eHnH+ Traes_2DS_C83B7F5CF.1 115 EFYNKYAGHVGFSVRKSTSHKSSENI-TKVRTFVCSREGYNRDKKSL--EAKKPRLDTRIGCPARLIIKVTPECKYRVTDFKAEHNHQ 199 6*********************6666.899*************9988..99************************************* PP FAR1 89 lap 91 lap Traes_2DS_C83B7F5CF.1 200 LAP 202 986 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF57716 | 2.14E-10 | 40 | 91 | No hit | No description |
SMART | SM00401 | 6.5E-6 | 41 | 94 | IPR000679 | Zinc finger, GATA-type |
CDD | cd00202 | 8.99E-8 | 44 | 82 | No hit | No description |
Gene3D | G3DSA:3.30.50.10 | 3.8E-11 | 44 | 83 | IPR013088 | Zinc finger, NHR/GATA-type |
Pfam | PF00320 | 1.2E-11 | 45 | 80 | IPR000679 | Zinc finger, GATA-type |
Pfam | PF03101 | 1.6E-23 | 115 | 202 | IPR004330 | FAR1 DNA binding domain |
Pfam | PF10551 | 2.2E-26 | 325 | 419 | IPR018289 | MULE transposase domain |
PROSITE profile | PS50966 | 9.977 | 604 | 640 | IPR007527 | Zinc finger, SWIM-type |
Pfam | PF04434 | 9.5E-7 | 610 | 639 | IPR007527 | Zinc finger, SWIM-type |
SMART | SM00575 | 5.4E-6 | 615 | 642 | IPR006564 | Zinc finger, PMZ-type |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0008270 | Molecular Function | zinc ion binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 712 aa Download sequence Send to blast |
MMHMLVASDG GGGEMHPYAA VPAEQELELH RDNAADDSLD GHVRCLRCGI SGNATPHMRR 60 GPDGPRTLCN ACGIAYRKGK MRRMIEAEPP IDEASLAKLV PEVDMEFESE EKAYEFYNKY 120 AGHVGFSVRK STSHKSSENI TKVRTFVCSR EGYNRDKKSL EAKKPRLDTR IGCPARLIIK 180 VTPECKYRVT DFKAEHNHQL APPSTMHMLR SQRILTELQS GEAELSDDSV VTPTTKATGD 240 LVVRQVGFLR SVSLLPADYK NYLRSKRTKA MQPGDGGAIL KYLQTMQMDN PSFFYTMQID 300 EDDKLTNFFW ADPKSREDFT YFDDVLCLDT TYKINGYGRP LALFLGVNHH RQTIIFGAAM 360 LYDESFESYK WLFESFKIAM HGKQPAVALI DQSIQLSSAM AAAWPNTAQR VCAWHVYQNS 420 VKHLNQVFQG SKTFAKDFSK CVFGYEEEEE FVFAWRSMLE KYDLRHNEWL SKLFDERERW 480 ALAYDRHIFC ADIISSLQAE SFSSILKKFL SPQLDLLSFF KHYERAVDEH RYAELQADFQ 540 ASQSYPRIPP AKMLKQTSHT YTPVVFEIFR KEFELFMDSV LFTCGEAGTT SDYKVAPSER 600 PKEHFVRFNS SDNSCMCTCK KFEFMGIPCC HMLKVLDYRN IKELPQIYLL KRWRRTAKST 660 DEDSQGHAAN DNRSSLNVSV PSANHHGLQS INARIQDTPL SNMHENPFHR SS |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | |||
GenBank | AK358341 | 0.0 | AK358341.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, partial cds, clone: NIASHv1074F13. |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_020175511.1 | 0.0 | protein FAR1-RELATED SEQUENCE 5-like | ||||
TrEMBL | A0A2X0S307 | 0.0 | A0A2X0S307_WHEAT; Uncharacterized protein | ||||
TrEMBL | A0A453B3N7 | 0.0 | A0A453B3N7_AEGTS; Uncharacterized protein | ||||
STRING | Traes_2DS_C83B7F5CF.1 | 0.0 | (Triticum aestivum) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP18 | 32 | 967 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT4G38180.1 | 1e-119 | FAR1-related sequence 5 |
Publications ? help Back to Top | |||
---|---|---|---|
|