PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Traes_2DS_9F6EA1670.1

Organism

Triticum aestivum

Taxonomic ID

4565

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum

Family

Dof

Protein Properties

Length: 479aa MW: 50967.9 Da PI: 6.173

Description

Dof family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Traes_2DS_9F6EA1670.1	genome	IWGSC	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-Dof	121.5	2.9e-38	102	162	2	62
zf-Dof 2 kekalkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknkkss 62 ++k+l+cprC+s++tkfCyynny+++qPr+fC++C+ryWt+GG++rn+PvG+grrk+k+ss Traes_2DS_9F6EA1670.1 102 PDKILPCPRCNSMDTKFCYYNNYNIHQPRHFCRGCQRYWTAGGSMRNLPVGAGRRKSKSSS 162 7899******************************************************986 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
ProDom	PD007478	8.0E-30	99	159	IPR003851	Zinc finger, Dof-type
Pfam	PF02701	2.7E-31	104	160	IPR003851	Zinc finger, Dof-type
PROSITE profile	PS50884	28.127	106	160	IPR003851	Zinc finger, Dof-type
PROSITE pattern	PS01361	0	108	144	IPR003851	Zinc finger, Dof-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 479 aa Download sequence Send to blast
MELAGAAHPQ PPESDVAPPR TPPQAPVEDS CKDTGDTRIT EENSCTPPDL NLSQPNNSGL 60 NSSSACENQT SNGDEMTEPE STLEAAKTEG DGSNKEKVLK KPDKILPCPR CNSMDTKFCY 120 YNNYNIHQPR HFCRGCQRYW TAGGSMRNLP VGAGRRKSKS SSTNCNGILI PGGSLAAPGG 180 DSSVIPLSIK ENQPAVKFGS DSTLPNSMAS LLRVEEQNKN SNPASTAHPR NGENQTCPPS 240 ATTSDNPRIE SVKAAVGVHQ NGITGDCNGV TPMPPIPCFP GPPFMYPWNP AWNGVPAMAA 300 PVCPVPAEPA NCSENGHGGN IQWNFPPMVP MPGFCGPPIP FPLMPPSVWP LVSPWPNGAW 360 SAPWLGPSYS MSAAPPTSSS TCSDSGSPVL GKHPRDSDPR GGEKAEKSLW IPKTLRIDDP 420 DEAAKSSIWT TLGIEPGERG MFRAFQPKSG GREQMSNAAR VMQANPAAQS RFASFQETT

Sequence ? help Back to Top

Protein Sequence Length: 479 aa Download sequence Send to blast

MELAGAAHPQ PPESDVAPPR TPPQAPVEDS CKDTGDTRIT EENSCTPPDL NLSQPNNSGL  60
NSSSACENQT SNGDEMTEPE STLEAAKTEG DGSNKEKVLK KPDKILPCPR CNSMDTKFCY  120
YNNYNIHQPR HFCRGCQRYW TAGGSMRNLP VGAGRRKSKS SSTNCNGILI PGGSLAAPGG  180
DSSVIPLSIK ENQPAVKFGS DSTLPNSMAS LLRVEEQNKN SNPASTAHPR NGENQTCPPS  240
ATTSDNPRIE SVKAAVGVHQ NGITGDCNGV TPMPPIPCFP GPPFMYPWNP AWNGVPAMAA  300
PVCPVPAEPA NCSENGHGGN IQWNFPPMVP MPGFCGPPIP FPLMPPSVWP LVSPWPNGAW  360
SAPWLGPSYS MSAAPPTSSS TCSDSGSPVL GKHPRDSDPR GGEKAEKSLW IPKTLRIDDP  420
DEAAKSSIWT TLGIEPGERG MFRAFQPKSG GREQMSNAAR VMQANPAAQS RFASFQETT

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AK358805	0.0	AK358805.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv1083I10.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_020181996.1	0.0	cyclic dof factor 1-like isoform X1
TrEMBL	A0A1D5V0E4	0.0	A0A1D5V0E4_WHEAT; Uncharacterized protein
STRING	Traes_2DS_9F6EA1670.1	0.0	(Triticum aestivum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP1434	38	116

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G39660.2	6e-42	cycling DOF factor 2

Publications ? help Back to Top
Brenchley R, et al. Analysis of the bread wheat genome using whole-genome shotgun sequencing. Nature, 2012. 491(7426): p. 705-10 [PMID:23192148]