PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Traes_2DS_9430AAD52.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
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Family | MYB | ||||||||
Protein Properties | Length: 750aa MW: 81803.9 Da PI: 4.9131 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 35.4 | 2.5e-11 | 52 | 92 | 7 | 48 |
HHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 7 eEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 eEd+ l ++ +G+++W+ Ia + +t+ qc+ rw++yl Traes_2DS_9430AAD52.1 52 EEDDVLRAQIAHHGTDNWTVIATQFK-DKTARQCRRRWYNYL 92 9************************9.**************7 PP | |||||||
2 | Myb_DNA-binding | 41.1 | 4e-13 | 98 | 141 | 1 | 46 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 +g W+ eEd ll +a k+lG++ W+ Ia+ + gRt++ +k+r+ + Traes_2DS_9430AAD52.1 98 KGGWSREEDMLLCEAQKLLGNK-WTEIAKVVS-GRTDNAVKNRFST 141 688*******************.*********.**********976 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51294 | 9.809 | 45 | 92 | IPR017930 | Myb domain |
SMART | SM00717 | 1.4E-7 | 45 | 94 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 2.2E-17 | 51 | 99 | IPR009057 | Homeodomain-like |
Pfam | PF13921 | 3.3E-13 | 52 | 109 | No hit | No description |
CDD | cd00167 | 2.70E-10 | 52 | 92 | No hit | No description |
SuperFamily | SSF46689 | 1.76E-24 | 71 | 150 | IPR009057 | Homeodomain-like |
PROSITE profile | PS51294 | 19.499 | 93 | 147 | IPR017930 | Myb domain |
SMART | SM00717 | 1.3E-13 | 97 | 145 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 5.6E-19 | 100 | 146 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 1.24E-9 | 101 | 142 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 750 aa Download sequence Send to blast |
PALRPAGPVR GTCGIWAHGD RPRSDLLLRR RRRRRVVGGQ EGPPHRQLER REEDDVLRAQ 60 IAHHGTDNWT VIATQFKDKT ARQCRRRWYN YLNTECKKGG WSREEDMLLC EAQKLLGNKW 120 TEIAKVVSGR TDNAVKNRFS TLCKRRAKDD ELFEENGTVC SNASAKRVLT RSGGVTCAAP 180 GSSPPIKNMS SCKPDFKENL APNMKSFGQQ KSIQQDSRQP LASICPDNQS VNIVKTQSLV 240 TKTSTKQLHG EEQSCVKHEG NFLKRNDPKL ATLLQQADLL SSLATKVNTE NTSQSMDEAW 300 QKLQNHLVKK DDNDMSESSM SGTASLLDDL DDLIVDPYEN EEEDEQKSRE QNGATSQMAP 360 DQIMDNCPVD QIADESSLCG NTLSSTMEPC PVAEILAHIN LGEAAEDMGL HFMEYSSPTH 420 AAQAQQAKAD AEIPASVDLS ESAEVQAQQA KADAEIPVSV DLSEAAEGSW SQFMEYTSPA 480 HTVLHAEGDA ETPASVKLSE AAEGSLPQCM EHMSPAHTLL RAKTDSEIPA SANSNEAAEG 540 SWSQFMEYMS PAHIVLHAKA DAETPASINL GEAAEGSLPQ CMEPMSPAHT LLRAKTDYEI 600 PASANLSEAA KDDSLQCTEY TSPARADLQA NADAEISENF SEVAQDSRLQ CAKFTSPAHT 660 AIKGKAVAKK GTSENCSDVP EDSSTQPCME FTSPAHTVPT FHPFTDNVPT PKITASERNF 720 LLSVLELASP GSKPETSQQP SCKRALLNSL |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1a5j_A | 3e-27 | 51 | 146 | 12 | 107 | B-MYB |
Search in ModeBase |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 28 | 34 | RRRRRRR |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | JF951913 | 0.0 | JF951913.1 Triticum carthlicum clone TaMYB30 R2R3-MYB protein mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_020160174.1 | 0.0 | transcription factor MYB124-like isoform X3 | ||||
TrEMBL | A0A3B6DCC5 | 0.0 | A0A3B6DCC5_WHEAT; Uncharacterized protein | ||||
STRING | Traes_2DS_9430AAD52.1 | 0.0 | (Triticum aestivum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP8903 | 38 | 47 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G02820.1 | 4e-65 | myb domain protein 88 |
Publications ? help Back to Top | |||
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