PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | Traes_2DS_8EA143F67.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
|
||||||||
Family | G2-like | ||||||||
Protein Properties | Length: 208aa MW: 22834.1 Da PI: 10.8612 | ||||||||
Description | G2-like family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | G2-like | 102 | 3.9e-32 | 38 | 92 | 1 | 55 |
G2-like 1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 kprl+WtpeLHerF +av++LGG++kAtPk+i+++m+++gLtl+h+kSHLQk+Rl Traes_2DS_8EA143F67.1 38 KPRLKWTPELHERFADAVKKLGGPDKATPKAIMRVMGIPGLTLYHLKSHLQKFRL 92 79****************************************************8 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51294 | 10.742 | 35 | 95 | IPR017930 | Myb domain |
Gene3D | G3DSA:1.10.10.60 | 3.7E-30 | 36 | 93 | IPR009057 | Homeodomain-like |
SuperFamily | SSF46689 | 1.22E-16 | 37 | 93 | IPR009057 | Homeodomain-like |
TIGRFAMs | TIGR01557 | 9.4E-24 | 38 | 93 | IPR006447 | Myb domain, plants |
Pfam | PF00249 | 5.0E-10 | 40 | 90 | IPR001005 | SANT/Myb domain |
Pfam | PF14379 | 1.4E-24 | 139 | 185 | IPR025756 | MYB-CC type transcription factor, LHEQLE-containing domain |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 208 aa Download sequence Send to blast |
MSSRPSLSPE NKFFMKGQGG AGAGGGGDAG LILSTDAKPR LKWTPELHER FADAVKKLGG 60 PDKATPKAIM RVMGIPGLTL YHLKSHLQKF RLSKNLQAQA NAVHAKNVYG FGTATDKACE 120 GRGSPADHLN RETNTSRSMH INDALQMQIE VQRRLHEQIE VQRHLQLRIE AQGKYLHSVL 180 EKAQEALGKQ HVSSPASKRR SPRSGCRS |
3D Structure ? help Back to Top | ||||||
---|---|---|---|---|---|---|
PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
6j4k_A | 2e-20 | 38 | 94 | 2 | 58 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j4k_B | 2e-20 | 38 | 94 | 2 | 58 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j4r_A | 2e-20 | 38 | 94 | 1 | 57 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j4r_B | 2e-20 | 38 | 94 | 1 | 57 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j4r_C | 2e-20 | 38 | 94 | 1 | 57 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j4r_D | 2e-20 | 38 | 94 | 1 | 57 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j5b_A | 2e-20 | 38 | 94 | 2 | 58 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j5b_C | 2e-20 | 38 | 94 | 2 | 58 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j5b_D | 2e-20 | 38 | 94 | 2 | 58 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j5b_F | 2e-20 | 38 | 94 | 2 | 58 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j5b_H | 2e-20 | 38 | 94 | 2 | 58 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j5b_J | 2e-20 | 38 | 94 | 2 | 58 | Protein PHOSPHATE STARVATION RESPONSE 1 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
UniProt | Transcription factor that may act on the GAL1 promoter (PubMed:12008900). Acts redundantly with MYR2 as a repressor of flowering and organ elongation under decreased light intensity (PubMed:21255164). Represses gibberellic acid (GA)-dependent responses and affects levels of bioactive GA (PubMed:21255164). {ECO:0000269|PubMed:21255164, ECO:0000305|PubMed:12008900}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | |||
GenBank | AK362598 | 0.0 | AK362598.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv2008K07. |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_020161185.1 | 1e-139 | myb-related protein 1-like | ||||
Swissprot | Q9FK47 | 1e-72 | PHLA_ARATH; Myb-related protein 1 | ||||
TrEMBL | A0A1D5UXP7 | 1e-138 | A0A1D5UXP7_WHEAT; Uncharacterized protein | ||||
STRING | Traes_2DS_8EA143F67.1 | 1e-153 | (Triticum aestivum) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP3574 | 38 | 79 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT5G18240.4 | 2e-69 | myb-related protein 1 |
Publications ? help Back to Top | |||
---|---|---|---|
|