PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Traes_2DS_8C3F6A558.1

Organism

Triticum aestivum

Taxonomic ID

4565

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum

Family

NAC

Protein Properties

Length: 387aa MW: 43534 Da PI: 6.6254

Description

NAC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Traes_2DS_8C3F6A558.1	genome	IWGSC	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NAM	164.3	4.5e-51	13	141	1	128
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpk.kvkaeekewyfFskrdkkyatgkrknratksgyWkatg 87 l+pGfrFhPtdeelv++yLkkk+++k++++ e i+++diyk++PwdLpk + +++e+e yf+++rd+ky+++ r+nr+t++g+Wkatg Traes_2DS_8C3F6A558.1 13 LMPGFRFHPTDEELVSFYLKKKIQQKPISI-ELIRQLDIYKFDPWDLPKlASTGGETESYFYCPRDRKYRNSARPNRVTAAGFWKATG 99 689*************************.89***********5255557789************************** PP NAM 88 kdkevlsk.kgelvglkktLvfykgrapkgektdWvmheyrl 128 +d++++s+ +++ vglkk+Lvfykgra +g ktdW+mhe+rl Traes_2DS_8C3F6A558.1 100 TDRPIYSSeGTRCVGLKKSLVFYKGRAARGIKTDWMMHEFRL 141 ***856667*************************98 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF101941	1.44E-55	12	173	IPR003441	NAC domain
PROSITE profile	PS51005	55.588	13	173	IPR003441	NAC domain
Pfam	PF02365	1.2E-24	15	141	IPR003441	NAC domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 387 aa Download sequence Send to blast
MESRNDVKSD EILMPGFRFH PTDEELVSFY LKKKIQQKPI SIELIRQLDI YKFDPWDLPK 60 LASTGGETES YFYCPRDRKY RNSARPNRVT AAGFWKATGT DRPIYSSEGT RCVGLKKSLV 120 FYKGRAARGI KTDWMMHEFR LPSLADTSLP KSRPIDKNIP LNDSWTICRI FKKTSSMAAQ 180 RALSHTWGAP LPGETEQDLF SALQPVQALH FASESSSSSL QVAAALPSYQ FNGKYGFQGQ 240 HQQFQKPSNT QENGSSCKVI SFNCGPSLQV LKGPIILPFQ TQPPSQRPML HTSPPIFFDA 300 QFGQPEQITG VVVTGSSEDV NADMSCREQE SSTTKHDDTF SMKNELEAPG RLNFPFDLGA 360 DSSDDWECNI PWESFLSPTA PDEIIQY

Sequence ? help Back to Top

Protein Sequence Length: 387 aa Download sequence Send to blast

MESRNDVKSD EILMPGFRFH PTDEELVSFY LKKKIQQKPI SIELIRQLDI YKFDPWDLPK  60
LASTGGETES YFYCPRDRKY RNSARPNRVT AAGFWKATGT DRPIYSSEGT RCVGLKKSLV  120
FYKGRAARGI KTDWMMHEFR LPSLADTSLP KSRPIDKNIP LNDSWTICRI FKKTSSMAAQ  180
RALSHTWGAP LPGETEQDLF SALQPVQALH FASESSSSSL QVAAALPSYQ FNGKYGFQGQ  240
HQQFQKPSNT QENGSSCKVI SFNCGPSLQV LKGPIILPFQ TQPPSQRPML HTSPPIFFDA  300
QFGQPEQITG VVVTGSSEDV NADMSCREQE SSTTKHDDTF SMKNELEAPG RLNFPFDLGA  360
DSSDDWECNI PWESFLSPTA PDEIIQY

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1ut4_A	4e-49	13	176	17	168	NO APICAL MERISTEM PROTEIN
1ut4_B	4e-49	13	176	17	168	NO APICAL MERISTEM PROTEIN
1ut7_A	4e-49	13	176	17	168	NO APICAL MERISTEM PROTEIN
1ut7_B	4e-49	13	176	17	168	NO APICAL MERISTEM PROTEIN
3swm_A	5e-49	13	176	20	171	NAC domain-containing protein 19
3swm_B	5e-49	13	176	20	171	NAC domain-containing protein 19
3swm_C	5e-49	13	176	20	171	NAC domain-containing protein 19
3swm_D	5e-49	13	176	20	171	NAC domain-containing protein 19
3swp_A	5e-49	13	176	20	171	NAC domain-containing protein 19
3swp_B	5e-49	13	176	20	171	NAC domain-containing protein 19
3swp_C	5e-49	13	176	20	171	NAC domain-containing protein 19
3swp_D	5e-49	13	176	20	171	NAC domain-containing protein 19
4dul_A	4e-49	13	176	17	168	NAC domain-containing protein 19
4dul_B	4e-49	13	176	17	168	NAC domain-containing protein 19
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Promotes periclinal root capforming cell divisions. Activates expression of its negative regulator SMB in a feedback loop for controlled switches in cell division plane. {ECO:0000269\|PubMed:19081078}.

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Repressed by SMB in oriented-divised root cap stem cells. {ECO:0000269\|PubMed:19081078}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_020190502.1	0.0	protein FEZ-like
Swissprot	Q9ZVH0	3e-96	FEZ_ARATH; Protein FEZ
TrEMBL	W5C6Q5	0.0	W5C6Q5_WHEAT; Uncharacterized protein
STRING	Traes_2DS_8C3F6A558.1	0.0	(Triticum aestivum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP3366	38	82

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G26870.1	9e-96	NAC family protein

Publications ? help Back to Top
Brenchley R, et al. Analysis of the bread wheat genome using whole-genome shotgun sequencing. Nature, 2012. 491(7426): p. 705-10 [PMID:23192148] Bennett T,van den Toorn A,Willemsen V,Scheres B Precise control of plant stem cell activity through parallel regulatory inputs. Development, 2014. 141(21): p. 4055-64 [PMID:25256342]