PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Traes_2DS_82DA4DF43.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
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Family | FAR1 | ||||||||
Protein Properties | Length: 65aa MW: 7846.31 Da PI: 7.5992 | ||||||||
Description | FAR1 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | FAR1 | 33.8 | 1.1e-10 | 26 | 64 | 2 | 40 |
FAR1 2 fYneYAkevGFsvrkskskkskrngeitkrtfvCskegk 40 fYn+Y+ e GFsvr+s+ + n +i+ r+fvCs+eg Traes_2DS_82DA4DF43.1 26 FYNKYGLEKGFSVRRSYVEWDXSNXHIILRKFVCSREGV 64 *************************************97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF03101 | 4.1E-8 | 26 | 64 | IPR004330 | FAR1 DNA binding domain |
Sequence ? help Back to Top |
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Protein Sequence Length: 65 aa Download sequence Send to blast |
VSHESMMEYY HIASKMFNSE DEGYTFYNKY GLEKGFSVRR SYVEWDXSNX HIILRKFVCS 60 REGVR |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | HG670306 | 2e-89 | HG670306.1 Triticum aestivum chromosome 3B, genomic scaffold, cultivar Chinese Spring. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_020165323.1 | 8e-37 | protein FAR1-RELATED SEQUENCE 5-like | ||||
Refseq | XP_020166814.1 | 5e-37 | protein FAR1-RELATED SEQUENCE 5-like | ||||
Refseq | XP_020188064.1 | 4e-36 | protein FAR1-RELATED SEQUENCE 5-like | ||||
TrEMBL | A0A453HKV6 | 8e-34 | A0A453HKV6_AEGTS; Uncharacterized protein | ||||
STRING | Traes_2DS_82DA4DF43.1 | 3e-39 | (Triticum aestivum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP2449 | 9 | 76 |
Publications ? help Back to Top | |||
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