PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Traes_2DS_7FB19CC37.1

Organism

Triticum aestivum

Taxonomic ID

4565

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum

Family

FAR1

Protein Properties

Length: 475aa MW: 53195.3 Da PI: 8.4567

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Traes_2DS_7FB19CC37.1	genome	IWGSC	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	86.3	4.5e-27	111	198	1	90
FAR1 1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHe 88 +fYn YA++vGF vr+s+ ++++n it+rtfvCs+eg+re++k + ++++ +r+etr+gC a+++++++ +gk+++t+++ +HnH+ Traes_2DS_7FB19CC37.1 111 EFYNIYAEKVGFFVRRSTLWTTSKNI-ITRRTFVCSREGFREKKKGA-KESKCPRPETRIGCPASMTIRLTPNGKYRLTEFVPNHNHQ 196 6******************97766.************9999.9999********************************** PP FAR1 89 la 90 la Traes_2DS_7FB19CC37.1 197 LA 198 97 PP
2	FAR1	83.6	3.1e-26	240	326	1	89
FAR1 1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHe 88 +fY+ YA ++GF+vr+++++ + ++ it+r fvCskeg+re+++ + ++ +++r+etrtgC a++++++ ++gk++vt++++ HnH Traes_2DS_7FB19CC37.1 240 EFYSMYAGKIGFNVRRASMTVN-AENVITRRMFVCSKEGFREKKRGA-NRVKKPRPETRTGCPACMVIRLASNGKYNVTEFVTFHNHG 325 6**************99998.5566************9998.9************************************9 PP FAR1 89 l 89 l Traes_2DS_7FB19CC37.1 326 L 326 8 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03101	1.4E-24	111	198	IPR004330	FAR1 DNA binding domain
Pfam	PF03101	2.9E-22	240	326	IPR004330	FAR1 DNA binding domain

Sequence ? help Back to Top
Protein Sequence Length: 475 aa Download sequence Send to blast
MSSNSGGGAK EKGPRIATPL VPPPLVQNSM PTASDGPTTD LRLAQQSWPG HVVLRPCTSW 60 PPHVNPAYPQ QNGEAVADVV AADVLPVINS CNEKMLPEVN MLFDDENDAY EFYNIYAEKV 120 GFFVRRSTLW TTSKNIITRR TFVCSREGFR EKKKGAKESK CPRPETRIGC PASMTIRLTP 180 NGKYRLTEFV PNHNHQLATA STIHMLKAKK IRRKARAVRE NLVDDTVVTP EFENEDEAYE 240 FYSMYAGKIG FNVRRASMTV NAENVITRRM FVCSKEGFRE KKRGANRVKK PRPETRTGCP 300 ACMVIRLASN GKYNVTEFVT FHNHGLGAAA ASDLVMTSLT AGSYQDCGVD LYDEALDDCY 360 GKQNLIKDDA TSNCLEGRSW KRYKCKVPHY GDVGATLEYL QKMQHDNPSF FYAVKSDEDG 420 NLTNFLWADS KSIMDFTHFG DVVCLDSGYE VQGYGRPIAL FTGLNHHRQT VIFGT

Sequence ? help Back to Top

Protein Sequence Length: 475 aa Download sequence Send to blast

MSSNSGGGAK EKGPRIATPL VPPPLVQNSM PTASDGPTTD LRLAQQSWPG HVVLRPCTSW  60
PPHVNPAYPQ QNGEAVADVV AADVLPVINS CNEKMLPEVN MLFDDENDAY EFYNIYAEKV  120
GFFVRRSTLW TTSKNIITRR TFVCSREGFR EKKKGAKESK CPRPETRIGC PASMTIRLTP  180
NGKYRLTEFV PNHNHQLATA STIHMLKAKK IRRKARAVRE NLVDDTVVTP EFENEDEAYE  240
FYSMYAGKIG FNVRRASMTV NAENVITRRM FVCSKEGFRE KKRGANRVKK PRPETRTGCP  300
ACMVIRLASN GKYNVTEFVT FHNHGLGAAA ASDLVMTSLT AGSYQDCGVD LYDEALDDCY  360
GKQNLIKDDA TSNCLEGRSW KRYKCKVPHY GDVGATLEYL QKMQHDNPSF FYAVKSDEDG  420
NLTNFLWADS KSIMDFTHFG DVVCLDSGYE VQGYGRPIAL FTGLNHHRQT VIFGT

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AK376616	0.0	AK376616.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv3129B22.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_020150776.1	0.0	protein FAR1-RELATED SEQUENCE 5-like isoform X1
Refseq	XP_020150777.1	0.0	protein FAR1-RELATED SEQUENCE 5-like isoform X1
Refseq	XP_020150778.1	0.0	protein FAR1-RELATED SEQUENCE 5-like isoform X1
Refseq	XP_020150779.1	0.0	protein FAR1-RELATED SEQUENCE 5-like isoform X1
Refseq	XP_020150781.1	0.0	protein FAR1-RELATED SEQUENCE 5-like isoform X1
Refseq	XP_020150782.1	0.0	protein FAR1-RELATED SEQUENCE 5-like isoform X1
Refseq	XP_020150783.1	0.0	protein FAR1-RELATED SEQUENCE 5-like isoform X1
TrEMBL	A0A2X0TRU3	0.0	A0A2X0TRU3_WHEAT; Uncharacterized protein
TrEMBL	A0A453BA39	0.0	A0A453BA39_AEGTS; Uncharacterized protein
STRING	Traes_2DS_7FB19CC37.1	0.0	(Triticum aestivum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP18	32	967

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G38180.1	1e-42	FAR1-related sequence 5

Publications ? help Back to Top
Brenchley R, et al. Analysis of the bread wheat genome using whole-genome shotgun sequencing. Nature, 2012. 491(7426): p. 705-10 [PMID:23192148]