PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Traes_2DS_7B6E75DD2.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
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Family | GRAS | ||||||||
Protein Properties | Length: 79aa MW: 8596.99 Da PI: 4.8106 | ||||||||
Description | GRAS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | GRAS | 28.2 | 2.4e-09 | 18 | 79 | 186 | 241 |
GRAS 186 ledleleeLrvkpgEalaVnlvlqlhrlldesvsles......erdevLklvkslsPkvvvv 241 +++l++++L + Eal+Vn+++ lh+++de++ + s r+ +Lk +++l P++vvv Traes_2DS_7B6E75DD2.1 18 VDQLRVQQLVSDGTEALIVNCHMLLHSVPDETAGSVSltqsvsLRTMLLKSIRTLDPTLVVV 79 6889999999999****************9987666655466678899************97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50985 | 9.624 | 1 | 79 | IPR005202 | Transcription factor GRAS |
Pfam | PF03514 | 8.2E-7 | 18 | 79 | IPR005202 | Transcription factor GRAS |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated |
Sequence ? help Back to Top |
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Protein Sequence Length: 79 aa Download sequence Send to blast |
MDFRMVPTSP ADAFTSLVDQ LRVQQLVSDG TEALIVNCHM LLHSVPDETA GSVSLTQSVS 60 LRTMLLKSIR TLDPTLVVV |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AK362740 | 1e-108 | AK362740.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv2009M24. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_020165039.1 | 3e-46 | scarecrow-like protein 32 | ||||
TrEMBL | A0A1D5UV25 | 8e-45 | A0A1D5UV25_WHEAT; Uncharacterized protein | ||||
TrEMBL | A0A453B6G1 | 8e-45 | A0A453B6G1_AEGTS; Uncharacterized protein | ||||
STRING | Traes_2DS_7B6E75DD2.1 | 4e-49 | (Triticum aestivum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP5697 | 37 | 59 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G49950.1 | 1e-14 | GRAS family protein |
Publications ? help Back to Top | |||
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