PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Traes_2DS_637EBDDC6.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
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Family | FAR1 | ||||||||
Protein Properties | Length: 362aa MW: 42161.4 Da PI: 6.5902 | ||||||||
Description | FAR1 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | FAR1 | 60.9 | 3.9e-19 | 61 | 146 | 1 | 91 |
FAR1 1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHe 88 +fY++YAk+ GF v ++++++ ++ + + t+ Cs++gk++ ++k+ + +++++tr++C ak++ +++ ++k+++t++ l+HnH+ Traes_2DS_637EBDDC6.1 61 SFYKDYAKKEGFGVIRRTTRHG-EDSKLVYFTLACSRQGKAQYSSKN---SFKPNPSTRMQCPAKVNSSRR-EEKFCITSITLDHNHA 143 5***************999998.6666999*************9999...999**************9999.9**************9 PP FAR1 89 lap 91 ++p Traes_2DS_637EBDDC6.1 144 ISP 146 875 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF03101 | 1.7E-16 | 61 | 146 | IPR004330 | FAR1 DNA binding domain |
Sequence ? help Back to Top |
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Protein Sequence Length: 362 aa Download sequence Send to blast |
MESDLIFGEV ADKNRSFEDA DEDAFIFEEI RDSSDDQQVE QIMMLHPKEG MTFDSEDAAV 60 SFYKDYAKKE GFGVIRRTTR HGEDSKLVYF TLACSRQGKA QYSSKNSFKP NPSTRMQCPA 120 KVNSSRREEK FCITSITLDH NHAISPSKAR FLRCHKKLDL HAKRRLELND QAGIRLNKKI 180 GSLIMEAGGY GNLEFGEKEC RNYLQETRRL KLGAGDAHVV YQYFLRMQSK DPDFFHLMDV 240 DKAWVEMINK YDLHENEWLA GLYAEKRWVP AYVKDTFWAG MSSTQRSESV NAFFDGYVHA 300 RTTLKQFVEQ YENALRDKVE KETKAVSKSF QEEIPCITHF DFEKQFQAAY TNAKFQEFQE 360 QL |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | HG670306 | 0.0 | HG670306.1 Triticum aestivum chromosome 3B, genomic scaffold, cultivar Chinese Spring. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_020171727.1 | 1e-122 | protein FAR-RED IMPAIRED RESPONSE 1-like isoform X1 | ||||
Refseq | XP_020171728.1 | 1e-122 | protein FAR-RED IMPAIRED RESPONSE 1-like isoform X1 | ||||
Refseq | XP_020171729.1 | 1e-122 | protein FAR-RED IMPAIRED RESPONSE 1-like isoform X1 | ||||
Refseq | XP_020171730.1 | 1e-122 | protein FAR-RED IMPAIRED RESPONSE 1-like isoform X1 | ||||
Refseq | XP_020171731.1 | 1e-122 | protein FAR-RED IMPAIRED RESPONSE 1-like isoform X1 | ||||
Refseq | XP_020171732.1 | 1e-122 | protein FAR-RED IMPAIRED RESPONSE 1-like isoform X2 | ||||
Refseq | XP_020171733.1 | 1e-122 | protein FAR-RED IMPAIRED RESPONSE 1-like isoform X2 | ||||
Refseq | XP_020171734.1 | 1e-122 | protein FAR-RED IMPAIRED RESPONSE 1-like isoform X2 | ||||
Refseq | XP_020171735.1 | 1e-122 | protein FAR-RED IMPAIRED RESPONSE 1-like isoform X2 | ||||
TrEMBL | A0A453AWX4 | 0.0 | A0A453AWX4_AEGTS; Uncharacterized protein | ||||
STRING | Traes_2DS_637EBDDC6.1 | 0.0 | (Triticum aestivum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP16056 | 5 | 7 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G38180.1 | 3e-29 | FAR1-related sequence 5 |
Publications ? help Back to Top | |||
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