PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Traes_2DS_4C8E5F416.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
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Family | TCP | ||||||||
Protein Properties | Length: 113aa MW: 11938.3 Da PI: 4.0773 | ||||||||
Description | TCP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | TCP | 73.8 | 5.4e-23 | 1 | 61 | 22 | 80 |
TCP 22 vRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgtssssasec..eaessss 80 +Rls+ +a++fF+Lqd LGfdk+skt+eWLl+q+kpai+ l++ ++ a ++ +++++ Traes_2DS_4C8E5F416.1 1 MRLSVGVAREFFALQDLLGFDKASKTVEWLLTQSKPAIDRLADATQGGAAAAaaGPSKEKG 61 8*******************************************66666333222222222 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51369 | 25.391 | 1 | 41 | IPR017887 | Transcription factor TCP subgroup |
Pfam | PF03634 | 8.2E-21 | 1 | 62 | IPR005333 | Transcription factor, TCP |
Sequence ? help Back to Top |
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Protein Sequence Length: 113 aa Download sequence Send to blast |
MRLSVGVARE FFALQDLLGF DKASKTVEWL LTQSKPAIDR LADATQGGAA AAAAGPSKEK 60 GEGATSSGTG FFEDAREEEQ DVRDLMKGIG GEGELDWFMS EPAAIGQPME GLD |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | BT063457 | 4e-43 | BT063457.1 Zea mays full-length cDNA clone ZM_BFc0065H12 mRNA, complete cds. | |||
GenBank | EU975636 | 4e-43 | EU975636.1 Zea mays clone 494952 teosinte branched1 protein mRNA, complete cds. | |||
GenBank | KJ726896 | 4e-43 | KJ726896.1 Zea mays clone pUT3439 TCP transcription factor (TCP15) mRNA, partial cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_020186977.1 | 4e-74 | transcription factor TCP12-like | ||||
TrEMBL | A0A3B6D4J2 | 1e-72 | A0A3B6D4J2_WHEAT; Uncharacterized protein | ||||
TrEMBL | R7W9G1 | 1e-72 | R7W9G1_AEGTA; Uncharacterized protein | ||||
STRING | EMT18143 | 2e-73 | (Aegilops tauschii) | ||||
STRING | Traes_2DS_4C8E5F416.1 | 3e-74 | (Triticum aestivum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP4052 | 31 | 72 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G18550.2 | 5e-16 | TCP family protein |
Publications ? help Back to Top | |||
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