PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Traes_2DS_49959692B.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
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Family | MYB | ||||||||
Protein Properties | Length: 292aa MW: 32883.3 Da PI: 7.5304 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 58.1 | 2e-18 | 14 | 61 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 +g+WT+eEde+l+ ++k++G g+W+t ++ + R++k+c++rw +yl Traes_2DS_49959692B.1 14 KGPWTQEEDEKLIAYIKKHGQGNWRTLPKDADLERCGKSCRLRWTNYL 61 79********************************************97 PP | |||||||
2 | Myb_DNA-binding | 54.9 | 2e-17 | 67 | 111 | 1 | 47 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 rgr++ eE+e +++++ lG++ W++Ia++++ gRt++++k++w+++ Traes_2DS_49959692B.1 67 RGRFSFEEEETIIQLHSILGNK-WSAIAARLP-GRTDNEIKNYWNTH 111 89********************.*********.************97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.10.10.60 | 1.8E-25 | 5 | 64 | IPR009057 | Homeodomain-like |
PROSITE profile | PS51294 | 18.343 | 9 | 61 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 1.8E-31 | 11 | 108 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 8.2E-15 | 13 | 63 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 1.1E-15 | 14 | 61 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 1.42E-12 | 16 | 61 | No hit | No description |
PROSITE profile | PS51294 | 25.255 | 62 | 116 | IPR017930 | Myb domain |
Gene3D | G3DSA:1.10.10.60 | 1.7E-26 | 65 | 116 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 1.8E-16 | 66 | 114 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 8.8E-16 | 67 | 111 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 1.88E-12 | 69 | 112 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 292 aa Download sequence Send to blast |
MGRAPCCDRT GLKKGPWTQE EDEKLIAYIK KHGQGNWRTL PKDADLERCG KSCRLRWTNY 60 LRPDIKRGRF SFEEEETIIQ LHSILGNKWS AIAARLPGRT DNEIKNYWNT HIRKRLLRMG 120 IDPVTHAPRL DLLDLSSLLK PAAYYPTQAD LDTLRAFEPL ANYPDLLRLA STLLAAPTTT 180 SSQPTTQQQM LLPWLIQAQM AQQVPQAPPQ HATAADMFLQ PSSACQMPGL VHANPAQQLH 240 QDHVVASDYG QLPGYDNQLE LDYVPALMQM ASDTSNLQWS SPVTSSNNNN CN |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1a5j_A | 9e-30 | 12 | 116 | 5 | 108 | B-MYB |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor that may function in osmotic stress and wounding signaling pathways (Probable). Contributes to basal resistance against the herbivore Pieris rapae (white cabbage butterfly) feeding (PubMed:19517001). {ECO:0000269|PubMed:19517001, ECO:0000305|PubMed:12857823}. |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Induced by light (PubMed:8980549). Induced by wounding, salt stress and abscisic acid (PubMed:12857823). Induced by the lepidopteran herbivore Pieris rapae (white cabbage butterfly) feeding (PubMed:19517001). {ECO:0000269|PubMed:12857823, ECO:0000269|PubMed:19517001, ECO:0000269|PubMed:8980549}. |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AK248579 | 0.0 | AK248579.1 Hordeum vulgare subsp. vulgare cDNA clone: FLbaf97l09, mRNA sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_020178661.1 | 0.0 | transcription factor MYB6-like | ||||
Swissprot | Q9LDR8 | 3e-94 | MY102_ARATH; Transcription factor MYB102 | ||||
TrEMBL | A0A1B2FQW9 | 0.0 | A0A1B2FQW9_WHEAT; MYB transcription factor 74 | ||||
TrEMBL | A0A453BAR0 | 0.0 | A0A453BAR0_AEGTS; Uncharacterized protein | ||||
STRING | Traes_2DS_49959692B.1 | 0.0 | (Triticum aestivum) | ||||
STRING | Traes_2DS_49959692B1.1 | 0.0 | (Triticum aestivum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP79 | 38 | 563 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G21440.1 | 3e-85 | MYB-like 102 |
Publications ? help Back to Top | |||
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