PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Traes_2DS_3F5D36630.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
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Family | MYB | ||||||||
Protein Properties | Length: 349aa MW: 38001.5 Da PI: 8.3946 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 47.6 | 3.9e-15 | 14 | 62 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT.-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGgg.tWktIartmgkgRtlkqcksrwqkyl 48 +g+W++eEd +l++ ++G+g +W + +++ g++R++k+c++rw++yl Traes_2DS_3F5D36630.1 14 KGPWSPEEDAKLKEFMDKHGTGgNWIALPQKAGLRRCGKSCRLRWLNYL 62 79*********************************************97 PP | |||||||
2 | Myb_DNA-binding | 34.9 | 3.6e-11 | 69 | 111 | 2 | 46 |
SSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS Myb_DNA-binding 2 grWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 g +T+ Ed + + G++ W+ Ia+ ++ gRt++++k++w++ Traes_2DS_3F5D36630.1 69 GEFTEHEDRVICSMYASIGSR-WSIIASQLP-GRTDNDIKNYWNT 111 78*******************.*********.***********97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51294 | 21.066 | 9 | 66 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 1.06E-26 | 11 | 109 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 4.8E-11 | 13 | 64 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 2.0E-14 | 14 | 62 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 2.4E-23 | 15 | 69 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 2.49E-8 | 16 | 62 | No hit | No description |
PROSITE profile | PS51294 | 15.818 | 67 | 117 | IPR017930 | Myb domain |
SMART | SM00717 | 5.8E-11 | 67 | 115 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 3.0E-9 | 69 | 111 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 1.03E-7 | 70 | 113 | No hit | No description |
Gene3D | G3DSA:1.10.10.60 | 1.2E-22 | 70 | 117 | IPR009057 | Homeodomain-like |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 349 aa Download sequence Send to blast |
MGRAPCCDKN NVKKGPWSPE EDAKLKEFMD KHGTGGNWIA LPQKAGLRRC GKSCRLRWLN 60 YLRPNIKHGE FTEHEDRVIC SMYASIGSRW SIIASQLPGR TDNDIKNYWN TKLKKKLLGS 120 TTMAGVGPPP RAPRQNHHQH RPVLLPYSSS PHSNYSNFFP GAGALLQQSA EPLTLQAQDH 180 YMLGSSGSLN HMNNNNNGAS AVQLQLLHAT AAHRQLQVKE ECGSGGAMIA FGCGDQQSCS 240 SSDGTQYAGG QYVHGGRHHG KEMSFDNNNG YSAYGVYGSG AGAVEQEHKL SFQLQHQQEQ 300 QQAQLDYSYE EIKQLLMTAA ASGADGGGGL IHDPELIGAH AATGKLTMM |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1a5j_A | 1e-26 | 14 | 117 | 7 | 108 | B-MYB |
Search in ModeBase |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AK368660 | 0.0 | AK368660.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv2077K09. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_020168809.1 | 0.0 | transcription factor RAX2-like | ||||
TrEMBL | W5C4H7 | 0.0 | W5C4H7_WHEAT; Uncharacterized protein | ||||
STRING | Traes_2DS_3F5D36630.1 | 0.0 | (Triticum aestivum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP135 | 38 | 412 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G57620.1 | 6e-71 | myb domain protein 36 |
Publications ? help Back to Top | |||
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