PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Traes_2DS_3E4E3BEFC.2 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
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Family | B3 | ||||||||
Protein Properties | Length: 790aa MW: 87907.9 Da PI: 7.7566 | ||||||||
Description | B3 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | B3 | 58.1 | 1.6e-18 | 287 | 386 | 1 | 98 |
EEEE-..-HHHHTT-EE--HHH.HTT..---..--SEEEEEETTS-EEEEEE....EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE CS B3 1 ffkvltpsdvlksgrlvlpkkfaeeh..ggkkeesktltledesgrsWevkliy..rkksgryvltkGWkeFvkangLkegDfvvFkl 84 f+k l+ sd+++ grlvlpkk+ae++ ++++e+ l+++d sg++W +++++ +++s++yvl+ G ++ +L++gD+v F++ Traes_2DS_3E4E3BEFC.2 287 FEKMLSASDAGRIGRLVLPKKCAEAYfpPISQPEGLPLKVQDASGKEWVFQFRFwpNNNSRMYVLE-GVTPCIQSMHLQAGDTVSFSR 373 89**************************555566778***************9989999999***9.********************9 PP -SSSEE..EEEEE- CS B3 85 dgrsefelvvkvfr 98 ++ e++lv+++++ Traes_2DS_3E4E3BEFC.2 374 ID-PEGKLVMGFRK 386 87.67767777665 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:2.40.330.10 | 6.6E-31 | 283 | 393 | IPR015300 | DNA-binding pseudobarrel domain |
SuperFamily | SSF101936 | 5.36E-21 | 284 | 390 | IPR015300 | DNA-binding pseudobarrel domain |
CDD | cd10017 | 3.13E-23 | 285 | 386 | No hit | No description |
PROSITE profile | PS50863 | 11.265 | 287 | 388 | IPR003340 | B3 DNA binding domain |
Pfam | PF02362 | 2.0E-15 | 287 | 386 | IPR003340 | B3 DNA binding domain |
SMART | SM01019 | 9.3E-22 | 287 | 387 | IPR003340 | B3 DNA binding domain |
PROSITE profile | PS51050 | 14.033 | 543 | 593 | IPR011124 | Zinc finger, CW-type |
Pfam | PF07496 | 1.6E-10 | 548 | 590 | IPR011124 | Zinc finger, CW-type |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0008270 | Molecular Function | zinc ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 790 aa Download sequence Send to blast |
MAPSQMWSTP TVHMPQNVAD RKDSYVKSWR PPTGQISSQW RQNHQLWNMS TIQADLQQRL 60 AYEFDRPSGS EKLPPGRTFI HAQEKKSDDM HDRPTTPAGM GQIIRDRYAN GLGQQTSMDP 120 THSSTPYQRE GPNPNSLHDP SHHVGESDPL SSRKGIISDG GSTVSTGFKL DSHHPSILKD 180 DAASTLPTMG GYTITNYPPV PGRSDHLRII PNNPQQPPTT VPLSVVQKQF YSHSVIEPNY 240 QAQFRNGKPR MDPKARSELL PRYWPRITDK ELQHLSGDSN SVITPLFEKM LSASDAGRIG 300 RLVLPKKCAE AYFPPISQPE GLPLKVQDAS GKEWVFQFRF WPNNNSRMYV LEGVTPCIQS 360 MHLQAGDTVS FSRIDPEGKL VMGFRKTKTQ EQIFRQEEPT KPANAAPNLP DVNINVTAPD 420 SSPNSSLVRP NKVNTDNKDS SPVEQAASKI DKGGVAQKEG PGTVRTSPGP VKRKATSIGP 480 KIKRFRIDNE ESMELKITWE EAQELLRPPL KAPSVVIVDG HEFEEYEEPP VLGRKTYFVT 540 DQSGENHQWA QCEDCSKWRK LPIDALLPSK WTCSDNKWDP ERMTCVSPQE ASMEELAELI 600 PIKAGAAKKA KLRMDTDSID VSDGLDTLAN LAILGEGESL PSQPTTKHPR HRPGCSCIVC 660 IQPPSGKGPK HKQTCTCNVC MTVRRRFRTL MLRREKRASE KESEEPPRKK EQGQSSESPQ 720 DPLLASTSPT STPQKVNGNG DDAEEAVEHS MASSPMKNQI DLNIQPERED EQSPKSDAVG 780 AMRLPRENAA |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
6j9a_A | 2e-64 | 265 | 387 | 2 | 124 | B3 domain-containing transcription repressor VAL1 |
Search in ModeBase |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_020159271.1 | 0.0 | B3 domain-containing protein Os07g0563300-like isoform X2 | ||||
Swissprot | Q0D5G4 | 0.0 | Y7633_ORYSJ; B3 domain-containing protein Os07g0563300 | ||||
TrEMBL | A0A453BA86 | 0.0 | A0A453BA86_AEGTS; Uncharacterized protein | ||||
STRING | Traes_2DS_3E4E3BEFC.2 | 0.0 | (Triticum aestivum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP7490 | 36 | 47 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G32010.1 | 1e-143 | HSI2-like 1 |
Publications ? help Back to Top | |||
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