PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Traes_2DS_2D035BAFD.1
Organism
Triticum aestivum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
Family GRAS
Protein Properties Length: 570aa    MW: 64242.7 Da    PI: 5.9498
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Traes_2DS_2D035BAFD.1genomeIWGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS422.53.6e-1292025693373
                   GRAS   3 elLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPi 90 
                             lL++cAea+s++ +e+  +l+++ + ++s +g+p+qRl ay++e+L ar  +s++++y+al+++e +   s+e l+++k++++++P+
  Traes_2DS_2D035BAFD.1 202 GLLTKCAEALSEDRTEEFLKLVQEARGTVSINGEPIQRLGAYLLEGLVARHGNSGTNIYRALKCREPE---SKELLSYMKILYNICPY 286
                            589****************************************************************9...9**************** PP

                   GRAS  91 lkfshltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesg..skeeleetgerLakfAeelgvpf 176
                            +kf++++aN aI ea+ +e+ +HiiDf+i qG+QW++L+qaLa+Rp+gpp++RiTg+++p s+  + e le +g+ L+++ +e+++p+
  Traes_2DS_2D035BAFD.1 287 FKFGYMAANGAIAEALRSEDNIHIIDFQIAQGTQWITLIQALAARPGGPPHVRITGIDDPVSEyaRGEGLEIVGNMLTSMSNEFNIPL 374
                            ************************************************************999999********************** PP

                   GRAS 177 efnvlvakrledleleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyy 264
                            ef++l +   ++++ e+L+++pgEa+aVn+ lqlh+++desv+++++rd +L++vk+lsPkv ++veqe+ +n+++Fl rfle+++yy
  Traes_2DS_2D035BAFD.1 375 EFTPL-SVYATQVTEEMLKIRPGEAVAVNFTLQLHHTPDESVDVNNPRDGLLRMVKGLSPKVTTLVEQESHTNTTPFLMRFLETMDYY 461
                            ****6.77899999************************************************************************** PP

                   GRAS 265 salfdsleaklpreseerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrve 352
                            sa+f+s++a+lpr+s+eri+vE+++l+++ivn++aceg++r+erhe l+kW++rl++aGFkp+pls+++++ +k ll+ ++ d y++e
  Traes_2DS_2D035BAFD.1 462 SAMFESIDANLPRDSKERISVEQHCLAKDIVNIIACEGKDRVERHELLGKWKSRLSMAGFKPYPLSSYVNSVIKKLLACYS-DKYTLE 548
                            ******************************************************************************999.55**** PP

                   GRAS 353 eesgslvlgWkdrpLvsvSaW 373
                            e++g+++lgW++r+L+s+SaW
  Traes_2DS_2D035BAFD.1 549 EKDGAMLLGWNTRKLISASAW 569
                            ********************* PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098565.034174551IPR005202Transcription factor GRAS
PfamPF035141.2E-126202569IPR005202Transcription factor GRAS
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
Sequence ? help Back to Top
Protein Sequence    Length: 570 aa     Download sequence    Send to blast
MDLHQLFKYR LTGANVFCEI PTENNLANSS WQTSPLKLEF SNSPYTPLST QLECDNLSAL  60
SNTPDNQSST ETISAQSISP LEADSSYIKA GSIRENIQVR PDPLYATSRH NMQQTLRDIE  120
NVLMAPDADD ATTSTKHEFE DTKPAQLMRQ RSRTWSHESR QPLPGVVRPY FASGGYPTAS  180
YEFRPEKRQR ELRDDRQQIV KGLLTKCAEA LSEDRTEEFL KLVQEARGTV SINGEPIQRL  240
GAYLLEGLVA RHGNSGTNIY RALKCREPES KELLSYMKIL YNICPYFKFG YMAANGAIAE  300
ALRSEDNIHI IDFQIAQGTQ WITLIQALAA RPGGPPHVRI TGIDDPVSEY ARGEGLEIVG  360
NMLTSMSNEF NIPLEFTPLS VYATQVTEEM LKIRPGEAVA VNFTLQLHHT PDESVDVNNP  420
RDGLLRMVKG LSPKVTTLVE QESHTNTTPF LMRFLETMDY YSAMFESIDA NLPRDSKERI  480
SVEQHCLAKD IVNIIACEGK DRVERHELLG KWKSRLSMAG FKPYPLSSYV NSVIKKLLAC  540
YSDKYTLEEK DGAMLLGWNT RKLISASAWH
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3g_A3e-721845693378Protein SCARECROW
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtMay play a regulatory role in the early step of oligosaccharide elicitor response, downstream of the membrane-associated high-affinity chitin-binding protein. {ECO:0000269|PubMed:12591613}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By oligosaccharide elicitor (N-Acetylchitooligosaccharide) extracted from the rice blast fungus (M.grisea) cell wall. Strongest induction by chitin oligomer with greater degree of polymerization (heptamer). By inoculation of M.grisea in rice cell suspension culture. {ECO:0000269|PubMed:12591613}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK3597010.0AK359701.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv1101A23.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020191335.10.0chitin-inducible gibberellin-responsive protein 1
SwissprotQ69VG10.0CIGR1_ORYSJ; Chitin-inducible gibberellin-responsive protein 1
TrEMBLA0A2X0TUG50.0A0A2X0TUG5_WHEAT; Uncharacterized protein
TrEMBLA0A453BC560.0A0A453BC56_AEGTS; Uncharacterized protein
STRINGTraes_2DS_2D035BAFD.10.0(Triticum aestivum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP106313643
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G48150.20.0GRAS family protein
Publications ? help Back to Top
  1. Day RB, et al.
    Two rice GRAS family genes responsive to N -acetylchitooligosaccharide elicitor are induced by phytoactive gibberellins: evidence for cross-talk between elicitor and gibberellin signaling in rice cells.
    Plant Mol. Biol., 2004. 54(2): p. 261-72
    [PMID:15159627]
  2. Brenchley R, et al.
    Analysis of the bread wheat genome using whole-genome shotgun sequencing.
    Nature, 2012. 491(7426): p. 705-10
    [PMID:23192148]