PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Traes_2DS_199F7B30E.1
Organism
Triticum aestivum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
Family HB-other
Protein Properties Length: 400aa    MW: 45382.6 Da    PI: 9.0011
Description HB-other family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Traes_2DS_199F7B30E.1genomeIWGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox46.56.3e-151667657
                           S--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHHC CS
               Homeobox  6 tftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakekk 57
                           + ++ q++ Le+++ + +yp+ e+ +e A+++gLt +qV++WF+ rR ke++
  Traes_2DS_199F7B30E.1 16 KKSPLQIQMLESFYSEVQYPNPEDVTEYAASVGLTYNQVRIWFKDRRRKERR 67
                           66899*********************************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5007114.949868IPR001356Homeobox domain
SMARTSM003896.3E-151072IPR001356Homeobox domain
SuperFamilySSF466895.13E-151075IPR009057Homeodomain-like
CDDcd000865.49E-141569No hitNo description
Gene3DG3DSA:1.10.10.604.5E-151576IPR009057Homeodomain-like
PfamPF000462.7E-121667IPR001356Homeobox domain
PROSITE patternPS0002704366IPR017970Homeobox, conserved site
SMARTSM005710.0017310369IPR018501DDT domain
PROSITE profilePS5082710.183310369IPR018501DDT domain
PfamPF027911.1E-7312364IPR018501DDT domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 400 aa     Download sequence    Send to blast
MMAKGFLAKS DNAGTKKSPL QIQMLESFYS EVQYPNPEDV TEYAASVGLT YNQVRIWFKD  60
RRRKERRHME AAEVHMETQA SARSNWPRCS SSRSSNSSQS PMQDTTGHQS YQDQSVLKKR  120
KIMSPTAQRS TLPFENNDPV RKHGKGKGLM TVWHAMYSQT AEIQDCSSFI DESGCLRSLR  180
PFEDCGGKLA QRQTLPRKKV NKKSRPPPSK RKVPCGRVTD LTEHPSVECH LSVDESESSE  240
LRTEQATLVD DEELELSELQ AGPNLLRCSA HLSSTGRHGC PLCKDLLARF PPPSVRMKQP  300
FPTKPWESSP EMVKKLFQVV RFVYTHFGSM DVHPFTFDEF AQAFHDKDSS LLGKVHVSLL  360
KLLMLNTERG SSSVFVPRSS KDSRFLSFLN FVSFEMCCTL
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK3739810.0AK373981.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv3049P02.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020187489.10.0homeobox-DDT domain protein RLT3-like
TrEMBLA0A453ASQ50.0A0A453ASQ5_AEGTS; Uncharacterized protein
STRINGTraes_2DS_199F7B30E.10.0(Triticum aestivum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP45563350
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G12750.12e-41Homeodomain-like transcriptional regulator
Publications ? help Back to Top
  1. Brenchley R, et al.
    Analysis of the bread wheat genome using whole-genome shotgun sequencing.
    Nature, 2012. 491(7426): p. 705-10
    [PMID:23192148]