PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Traes_2DS_11ADF414D.1
Organism
Triticum aestivum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
Family C2H2
Protein Properties Length: 196aa    MW: 20763.6 Da    PI: 8.3119
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Traes_2DS_11ADF414D.1genomeIWGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H215.45.3e-055072123
                           EEETTTTEEESSHHHHHHHHHHT CS
                zf-C2H2  1 ykCpdCgksFsrksnLkrHirtH 23
                           ++C+ Cgk F+++  L  H  +H
  Traes_2DS_11ADF414D.1 50 FRCSVCGKAFPSHQALGGHKASH 72
                           89*************99998887 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF139128.5E-124974IPR007087Zinc finger, C2H2
SMARTSM003550.00685072IPR015880Zinc finger, C2H2-like
SuperFamilySSF576671.51E-850125No hitNo description
PROSITE profilePS5015710.7625077IPR007087Zinc finger, C2H2
PROSITE patternPS0002805272IPR007087Zinc finger, C2H2
PfamPF139126.3E-11103126IPR007087Zinc finger, C2H2
PROSITE profilePS501579.411103125IPR007087Zinc finger, C2H2
SMARTSM003550.65103125IPR015880Zinc finger, C2H2-like
PROSITE patternPS000280105125IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 196 aa     Download sequence    Send to blast
MMKMTHDDYV HLCLMALASV ATGGDQAQAA EGQWLHTVTA AAPAACELRF RCSVCGKAFP  60
SHQALGGHKA SHRKRAALVL PLQSVSPAEE AVASSTSSGV GGHRCSVCHR SFATGQALGG  120
HKRCHYWDGL SVSLTASASG SGSSARDFDL NLTPVPEKAA AGMRRWGEEE EVQSPLPFKK  180
RRLSSPSLEL NLILLD
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor involved in abscisic acid (ABA) signaling. Required for the regulation of the cross-talk between NADPH oxidase, hydrogen peroxide and MAP kinase in ABA signaling. Regulates the expression of the NADPH oxidase genes RBOHB and RBOHE, and the MAPK genes MPK1, MPK4, MPK5, MPK7 and MPK14. Regulates ABA-induced hydrogen peroxide production and antioxidant defense. Required for tolerance to water stress and oxidative stress. {ECO:0000269|PubMed:25071223}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced by abscisic acid (ABA) and hydrogen peroxide. {ECO:0000269|PubMed:25071223}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC1068872e-70AC106887.3 Oryza sativa chromosome 3 BAC OSJNBa0054H04 genomic sequence, complete sequence.
GenBankAC1478032e-70AC147803.2 Oryza sativa chromosome 3 BAC OSJNBb0034P05 genomic sequence, complete sequence.
GenBankAK1089972e-70AK108997.1 Oryza sativa Japonica Group cDNA clone:002-153-G07, full insert sequence.
GenBankAP0149592e-70AP014959.1 Oryza sativa Japonica Group DNA, chromosome 3, cultivar: Nipponbare, complete sequence.
GenBankAP0149672e-70AP014967.1 Oryza sativa Japonica Group DNA, chromosome 11, cultivar: Nipponbare, complete sequence.
GenBankCP0126112e-70CP012611.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 3 sequence.
GenBankCT8289452e-70CT828945.1 Oryza sativa (indica cultivar-group) cDNA clone:OSIGCRN135A02, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020182764.11e-132zinc finger protein ZAT6-like
SwissprotQ75KE51e-50ZFP36_ORYSJ; Zinc finger protein 36
TrEMBLW5C3541e-141W5C354_WHEAT; Uncharacterized protein
STRINGTraes_2DS_11ADF414D.11e-142(Triticum aestivum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP34123273
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G04340.14e-31zinc finger of Arabidopsis thaliana 6
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]
  2. Yilmaz A, et al.
    GRASSIUS: a platform for comparative regulatory genomics across the grasses.
    Plant Physiol., 2009. 149(1): p. 171-80
    [PMID:18987217]
  3. Brenchley R, et al.
    Analysis of the bread wheat genome using whole-genome shotgun sequencing.
    Nature, 2012. 491(7426): p. 705-10
    [PMID:23192148]
  4. Zhang H, et al.
    A novel rice C2H2-type zinc finger protein, ZFP36, is a key player involved in abscisic acid-induced antioxidant defence and oxidative stress tolerance in rice.
    J. Exp. Bot., 2014. 65(20): p. 5795-809
    [PMID:25071223]
  5. Li W, et al.
    A Natural Allele of a Transcription Factor in Rice Confers Broad-Spectrum Blast Resistance.
    Cell, 2017. 170(1): p. 114-126.e15
    [PMID:28666113]