PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Traes_2DL_DCD7B13A8.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
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Family | bHLH | ||||||||
Protein Properties | Length: 435aa MW: 46000.3 Da PI: 7.1365 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 15.1 | 4.2e-05 | 320 | 357 | 12 | 54 |
HHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS HLH 12 RRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 R +++ +++ L++l+ + +K + a++L +++eYIk L Traes_2DL_DCD7B13A8.1 320 RKEKLGDRITALQQLVSPF-----GKTDTASVLHETIEYIKFL 357 677888999*******998.....8****************98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50888 | 12.017 | 308 | 357 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
CDD | cd00083 | 2.62E-5 | 318 | 361 | No hit | No description |
SuperFamily | SSF47459 | 3.53E-11 | 318 | 376 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene3D | G3DSA:4.10.280.10 | 6.6E-8 | 318 | 366 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 435 aa Download sequence Send to blast |
MGDHQLMHAA PAMYNGGGAG AVSHGMWWNS NATAAVPAAA CSTELAGFNT WPAGLAAGGY 60 DVGADGGKQA KSCTTTASSE SPGNNSSLTF QETASINDPA AAGFTDWNNP YMSSGAGNMH 120 GFLQVGHHDM SSRTDQQSMM NAVAAPNNLD LALQGHHHHQ QQQQDDHHRQ QQLLSSLGAP 180 ELLLSPNSPY GFQSSLLRSL IEPTGKPAPA AGLLQQYQYQ QMGGQTGARE PLQFTNDAAF 240 WNQSAGFGMG MAAPPATDNT SVRAVKQPSP APRGANLALK TVLEGVGDSS SIVAKKASGE 300 PAFKKPRMET PSPLPTFKVR KEKLGDRITA LQQLVSPFGK TDTASVLHET IEYIKFLHDQ 360 VGVLSAPYLK SGHHQHQVPQ YLKSSSNGSP DKSCKDGGEV SLKGRGLCLV PISSTFAVAS 420 DVPVDFWNPF GPQFR |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AK364303 | 0.0 | AK364303.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv2023J11. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_020168093.1 | 0.0 | transcription factor bHLH112-like | ||||
TrEMBL | W5C140 | 0.0 | W5C140_WHEAT; Uncharacterized protein | ||||
STRING | Traes_2DL_DCD7B13A8.1 | 0.0 | (Triticum aestivum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP2216 | 37 | 87 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G61660.1 | 3e-45 | bHLH family protein |
Publications ? help Back to Top | |||
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