PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | Traes_2DL_D8AD25F43.2 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
|
||||||||
Family | Nin-like | ||||||||
Protein Properties | Length: 177aa MW: 20855.9 Da PI: 8.32 | ||||||||
Description | Nin-like family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | RWP-RK | 85.4 | 5.1e-27 | 43 | 92 | 3 | 52 |
RWP-RK 3 keisledlskyFslpikdAAkeLgvclTvLKriCRqyGIkRWPhRkiksl 52 ++i+l+d+++yF+lpi++A+++L+++l++LK++CRqyGI+RWPhRk+ksl Traes_2DL_D8AD25F43.2 43 ASITLNDIAQYFHLPIREASRTLKIGLSILKKKCRQYGIPRWPHRKLKSL 92 689*********************************************97 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51519 | 19.361 | 27 | 115 | IPR003035 | RWP-RK domain |
Pfam | PF02042 | 3.1E-22 | 44 | 92 | IPR003035 | RWP-RK domain |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 177 aa Download sequence Send to blast |
MSEFHCCLSF CFLQNADSDL NLTDADLLAP AEKQRRAHRE YIASITLNDI AQYFHLPIRE 60 ASRTLKIGLS ILKKKCRQYG IPRWPHRKLK SLDSLIHDLE YVIDDETERD GVKQEDHMQD 120 EKENQDAIEA LAKRKRMLET EKATIQQKPT LDLMAETKQF RQYVFKRKYR AKTLVSE |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | |||
GenBank | AK373835 | 0.0 | AK373835.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv3045A19. |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_020158589.1 | 1e-105 | protein RKD5-like | ||||
TrEMBL | A0A453CMI2 | 1e-128 | A0A453CMI2_AEGTS; Uncharacterized protein | ||||
STRING | Traes_2DL_D8AD25F43.2 | 1e-129 | (Triticum aestivum) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP10673 | 31 | 42 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT4G35590.1 | 2e-38 | RWP-RK domain-containing protein |
Publications ? help Back to Top | |||
---|---|---|---|
|