PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Traes_2DL_CB03F0D2A.1
Organism
Triticum aestivum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
Family ERF
Protein Properties Length: 190aa    MW: 21499 Da    PI: 12.4841
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Traes_2DL_CB03F0D2A.1genomeIWGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP247.73.9e-15647247
                    AP2  2 gykGVrwdkkrgrWvAeIrdpsengkr..krfslgkfgtaeeAakaai 47
                           +y+GVr+++ +g+Wv+eIr+p        +r++lg++ tae+Aa+a +
  Traes_2DL_CB03F0D2A.1  6 RYRGVRQRH-WGSWVSEIRHP-----LmkTRIWLGTYETAEDAARADD 47
                           69******9.**********7.....335****************966 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000181.92E-13538No hitNo description
SMARTSM003809.4E-16673IPR001471AP2/ERF domain
PfamPF008479.6E-9648IPR001471AP2/ERF domain
SuperFamilySSF541717.19E-14650IPR016177DNA-binding domain
Gene3DG3DSA:3.30.730.103.9E-23649IPR001471AP2/ERF domain
PROSITE profilePS5103217.148649IPR001471AP2/ERF domain
PRINTSPR003676.7E-11718IPR001471AP2/ERF domain
PRINTSPR003676.7E-112945IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 190 aa     Download sequence    Send to blast
MPKLQRYRGV RQRHWGSWVS EIRHPLMKTR IWLGTYETAE DAARADDXAG HVRDGGGRGA  60
GVRRGGEAHE RASGAHQLPL HQRCCRRRRR RPLRDPARQA GEMLHGDGAA GAKRRGDQGG  120
EDRRRRRSPK QGRGRRQARG RGGGVHRGDD QGAHPLRLRG DRRPLRLLQL RRLARLARRP  180
PSSQTGRSPS
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
18290RCCRRRRRR
28593RRRRRRPLR
3112126KRRGDQGGEDRRRRR
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
TrEMBLA0A446MT035e-46A0A446MT03_TRITD; Uncharacterized protein
STRINGTraes_2DL_CB03F0D2A.11e-124(Triticum aestivum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP141835118
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G25190.14e-18ERF family protein
Publications ? help Back to Top
  1. Brenchley R, et al.
    Analysis of the bread wheat genome using whole-genome shotgun sequencing.
    Nature, 2012. 491(7426): p. 705-10
    [PMID:23192148]