PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Traes_2DL_C964675DE.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
Family MYB
Protein Properties Length: 126aa    MW: 14620.9 Da    PI: 10.3097
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Traes_2DL_C964675DE.1genomeIWGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding55.41.4e-171461148
                           TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
        Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                           +g+WT+eEd++l+ +++q G g+W++ +++ g+ R++k+c++rw +yl
  Traes_2DL_C964675DE.1 14 KGPWTPEEDQKLLSYIEQQGHGCWRSLPAKAGLQRCGKSCRLRWTNYL 61
                           79********************************************97 PP

2Myb_DNA-binding55.51.3e-1767112148
                            TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
        Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 
                            rg+++ +E++ +++++++lG++ W++Ia +++ +Rt++++k++w+++l
  Traes_2DL_C964675DE.1  67 RGKFSLQEEQTIIQLHALLGNR-WSAIATHLP-KRTDNEIKNYWNTHL 112
                            89********************.*********.************996 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.602.1E-26564IPR009057Homeodomain-like
PROSITE profilePS5129416.81961IPR017930Myb domain
SuperFamilySSF466893.41E-3011108IPR009057Homeodomain-like
SMARTSM007176.4E-131363IPR001005SANT/Myb domain
PfamPF002494.8E-161461IPR001005SANT/Myb domain
CDDcd001674.32E-101661No hitNo description
PROSITE profilePS5129425.89162116IPR017930Myb domain
Gene3DG3DSA:1.10.10.604.5E-2765116IPR009057Homeodomain-like
SMARTSM007171.2E-1666114IPR001005SANT/Myb domain
PfamPF002496.8E-1767112IPR001005SANT/Myb domain
CDDcd001673.42E-1169112No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 126 aa     Download sequence    Send to blast
MGRSPCCEKE GLKKGPWTPE EDQKLLSYIE QQGHGCWRSL PAKAGLQRCG KSCRLRWTNY  60
LRPDIKRGKF SLQEEQTIIQ LHALLGNRWS AIATHLPKRT DNEIKNYWNT HLKKRLAKMG  120
IDPVTH
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A1e-28121165108B-MYB
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtFunctions as a repressor of epidermal cell outgrowth and negatively regulate trichome branch formation (PubMed:18805951, PubMed:21070410). Acts as both a positive and negative regulator of cellular outgrowth. Promotes both trichome expansion and branch formation (PubMed:21070410). Coordinately with WIN1/SHN1, participates in the regulation of cuticle biosynthesis and wax accumulation in reproductive organs and trichomes. Functions in cuticle nanoridge formation in petals and stamens, and in morphogenesis of petal conical cells and trichomes (PubMed:23709630). May play a role in the regulation of cuticle formation in vegetative organs (PubMed:24169067). {ECO:0000269|PubMed:18805951, ECO:0000269|PubMed:21070410, ECO:0000269|PubMed:23709630, ECO:0000269|PubMed:24169067}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankJF9519180.0JF951918.1 Triticum aestivum clone TaMYB16 R2R3-MYB protein mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020168407.13e-92myb-related protein Myb4-like
SwissprotQ9LE633e-84MY106_ARATH; Transcription factor MYB106
TrEMBLA0A3B6C8697e-91A0A3B6C869_WHEAT; Uncharacterized protein
TrEMBLA0A446L6I17e-91A0A446L6I1_TRITD; Uncharacterized protein
TrEMBLA0A446MFC97e-91A0A446MFC9_TRITD; Uncharacterized protein
TrEMBLA0A453C5336e-91A0A453C533_AEGTS; Uncharacterized protein
TrEMBLG9DR816e-91G9DR81_WHEAT; MYB transcription factor 16
STRINGBRADI5G12417.11e-90(Brachypodium distachyon)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP7938563
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G15310.22e-86myb domain protein 16
Publications ? help Back to Top
  1. Zhang L,Zhao G,Jia J,Liu X,Kong X
    Molecular characterization of 60 isolated wheat MYB genes and analysis of their expression during abiotic stress.
    J. Exp. Bot., 2012. 63(1): p. 203-14
    [PMID:21934119]