PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Traes_2DL_C46B73FA3.2
Organism
Triticum aestivum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
Family GATA
Protein Properties Length: 440aa    MW: 47886.8 Da    PI: 7.8716
Description GATA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Traes_2DL_C46B73FA3.2genomeIWGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GATA44.42.3e-14741135
                   GATA  1 CsnCgttkTplWRrgpdgnktLCnaCGlyyrkkgl 35
                           C +Cg+t+TplWR+gp  ++ LCnaCG ++r kg+
  Traes_2DL_C46B73FA3.2  7 CCHCGVTSTPLWRNGPPHKPVLCNACGSRWRTKGS 41
                           99**************88888***********997 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004011.5E-8153IPR000679Zinc finger, GATA-type
SuperFamilySSF577164.32E-11446No hitNo description
CDDcd002021.76E-14652No hitNo description
Gene3DG3DSA:3.30.50.101.7E-11741IPR013088Zinc finger, NHR/GATA-type
PfamPF003203.2E-12741IPR000679Zinc finger, GATA-type
PROSITE profilePS5011411.213740IPR000679Zinc finger, GATA-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0008270Molecular Functionzinc ion binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 440 aa     Download sequence    Send to blast
MGKEGPCCHC GVTSTPLWRN GPPHKPVLCN ACGSRWRTKG SLENYTPMHS RDDIDADQPR  60
VSKLKPPTLR LKEQRQLKKK PSHSIRENGA FSDQNFWKMG DADPSRSSSG SALSYSESCA  120
PYGSADASEM GSAQSHAWES LVPSKKRSCV TRTKSSSVDM LVKDLHCIMH EEQLCYLSGS  180
SEEDLIYHTA TPVGSFEIGY GSMLLRSSNS KSAEEDSEAN SVPADNKSFL TSESYSGTAS  240
FVVHSESKGA SNSNASPEKP KWFPVQTHEI VKRGKLHYSK QHTLENVGSA LVSVALEGEG  300
TKETGGNENT SALKDLTKST MKPLKRPHES QLQSCQEGTM RIAKKVCKSV AMAPQFKGSF  360
LPKSGGAPFN LLMLPPDKIS MLAPPQYMDN SDQDLLLEVP LNARQPEAEL LCQPFQLSSV  420
TRSSSSADVV ADGEGRLKQP
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK3625810.0AK362581.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv2008F08.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020173115.10.0GATA transcription factor 26-like isoform X1
TrEMBLW5C0000.0W5C000_WHEAT; Uncharacterized protein
STRINGTraes_2DL_C46B73FA3.20.0(Triticum aestivum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP44243464
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G17570.31e-54GATA transcription factor 26
Publications ? help Back to Top
  1. Brenchley R, et al.
    Analysis of the bread wheat genome using whole-genome shotgun sequencing.
    Nature, 2012. 491(7426): p. 705-10
    [PMID:23192148]