PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Traes_2DL_C417E5A19.1
Organism
Triticum aestivum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
Family bHLH
Protein Properties Length: 83aa    MW: 8880.96 Da    PI: 4.547
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Traes_2DL_C417E5A19.1genomeIWGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH20.77.3e-0710501554
                           HHHHHHHHHHCTSCC.C...TTS-STCHHHHHHHHHHHHHH CS
                    HLH 15 riNsafeeLrellPk.askapskKlsKaeiLekAveYIksL 54
                           +i + +++L+ +lP+ + ++++ + s a +Le+++ YI+sL
  Traes_2DL_C417E5A19.1 10 QISELLSKLQAVLPEsQARNGAHRGSAARVLEETCSYIRSL 50
                           7999***********666888888***************99 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS508888.746150IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474591.44E-7966IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.107.1E-71067IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 83 aa     Download sequence    Send to blast
GSSSSISEEQ ISELLSKLQA VLPESQARNG AHRGSAARVL EETCSYIRSL HRELDDLSET  60
LAALLASDAV TAEQAVVIRS LLM
Functional Description ? help Back to Top
Source Description
UniProtAtypical and probable non DNA-binding bHLH transcription factor that acts as a positive regulator of cell elongation and plant development. Binds the transcription repressor IBH1 and forms a heterodimer of antagonistic bHLH transcription factors that function downstream of BZR1 to mediate brassinosteroid regulation of cell elongation and lamina inclination (By similarity). {ECO:0000250}.
UniProtAtypical and probable non DNA-binding bHLH transcription factor that acts as a positive regulator of cell elongation and plant development. Binds the transcription repressor IBH1 and forms a heterodimer of antagonistic bHLH transcription factors that function downstream of BZR1 to mediate brassinosteroid regulation of cell elongation and lamina inclination. {ECO:0000269|PubMed:20009022}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By epibrassinolide. {ECO:0000269|PubMed:20009022}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK3732875e-94AK373287.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv3026B22.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020169428.19e-51transcription factor ILI1-like
SwissprotA2XY471e-38ILI1_ORYSI; Transcription factor ILI1
SwissprotQ7X7421e-38ILI1_ORYSJ; Transcription factor ILI1
TrEMBLA0A3B6DPY82e-49A0A3B6DPY8_WHEAT; Uncharacterized protein
TrEMBLA0A452XEJ82e-49A0A452XEJ8_AEGTS; Uncharacterized protein
TrEMBLM8BR102e-49M8BR10_AEGTA; Transcription factor bHLH135
STRINGEMT053973e-50(Aegilops tauschii)
STRINGTraes_2DL_C417E5A19.13e-50(Triticum aestivum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP122932837
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G39860.14e-17bHLH family protein
Publications ? help Back to Top
  1. Brenchley R, et al.
    Analysis of the bread wheat genome using whole-genome shotgun sequencing.
    Nature, 2012. 491(7426): p. 705-10
    [PMID:23192148]