PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Traes_2DL_B9444E406.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
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Family | NAC | ||||||||
Protein Properties | Length: 126aa MW: 14480.3 Da PI: 10.6476 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 106.5 | 3.4e-33 | 12 | 87 | 54 | 128 |
NAM 54 eekewyfFskrdkkyatgkrknratksgyWkatgkdkevlsk.kgelvglkktLvfykgrapkgektdWvmheyrl 128 + +ewyfFs rd+kyatg+r+nratk+gyWkatgkd+ev s ++++vg++ktLvfy+grap+g+kt+Wvmhe+rl Traes_2DL_B9444E406.1 12 TASEWYFFSFRDRKYATGSRTNRATKTGYWKATGKDREVRSPaTRAVVGMRKTLVFYQGRAPNGSKTSWVMHEFRL 87 567**************************************977788***************************98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51005 | 40.68 | 1 | 106 | IPR003441 | NAC domain |
SuperFamily | SSF101941 | 8.5E-39 | 9 | 106 | IPR003441 | NAC domain |
Pfam | PF02365 | 2.3E-16 | 15 | 87 | IPR003441 | NAC domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 126 aa Download sequence Send to blast |
MLWASEDVAK LTASEWYFFS FRDRKYATGS RTNRATKTGY WKATGKDREV RSPATRAVVG 60 MRKTLVFYQG RAPNGSKTSW VMHEFRLDSP HLPPREDWVL CRVFQKQKLD GEQDNARSSS 120 PPFAGS |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1ut4_A | 1e-32 | 3 | 107 | 60 | 166 | NO APICAL MERISTEM PROTEIN |
1ut4_B | 1e-32 | 3 | 107 | 60 | 166 | NO APICAL MERISTEM PROTEIN |
1ut7_A | 1e-32 | 3 | 107 | 60 | 166 | NO APICAL MERISTEM PROTEIN |
1ut7_B | 1e-32 | 3 | 107 | 60 | 166 | NO APICAL MERISTEM PROTEIN |
3swm_A | 1e-32 | 3 | 107 | 63 | 169 | NAC domain-containing protein 19 |
3swm_B | 1e-32 | 3 | 107 | 63 | 169 | NAC domain-containing protein 19 |
3swm_C | 1e-32 | 3 | 107 | 63 | 169 | NAC domain-containing protein 19 |
3swm_D | 1e-32 | 3 | 107 | 63 | 169 | NAC domain-containing protein 19 |
3swp_A | 1e-32 | 3 | 107 | 63 | 169 | NAC domain-containing protein 19 |
3swp_B | 1e-32 | 3 | 107 | 63 | 169 | NAC domain-containing protein 19 |
3swp_C | 1e-32 | 3 | 107 | 63 | 169 | NAC domain-containing protein 19 |
3swp_D | 1e-32 | 3 | 107 | 63 | 169 | NAC domain-containing protein 19 |
4dul_A | 1e-32 | 3 | 107 | 60 | 166 | NAC domain-containing protein 19 |
4dul_B | 1e-32 | 3 | 107 | 60 | 166 | NAC domain-containing protein 19 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcriptional activator that mediates auxin signaling to promote lateral root development. Activates the expression of two downstream auxin-responsive genes, DBP and AIR3. {ECO:0000269|PubMed:11114891}. |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Induced by auxin. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AK248480 | 1e-177 | AK248480.1 Hordeum vulgare subsp. vulgare cDNA clone: FLbaf7e16, mRNA sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_020168520.1 | 8e-85 | protein CUP-SHAPED COTYLEDON 1-like | ||||
Swissprot | Q84TE6 | 4e-41 | NAC22_ARATH; NAC domain-containing protein 21/22 | ||||
TrEMBL | A0A453CI41 | 1e-88 | A0A453CI41_AEGTS; Uncharacterized protein | ||||
STRING | Traes_2DL_B9444E406.1 | 1e-89 | (Triticum aestivum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP697 | 38 | 166 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G28530.1 | 2e-57 | NAC domain containing protein 74 |