PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Traes_2DL_AE270CBAA1.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
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Family | NAC | ||||||||
Protein Properties | Length: 284aa MW: 31945.3 Da PI: 8.944 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 89.3 | 6.7e-28 | 62 | 206 | 1 | 128 |
NAM 1 lppGfrFhPtdeelvveyLkkkvegkk....leleev.ikev.diykvePwdLpkkvkaeekewyfFskrdkkyatgkrknra.... 77 lp+G++F+Pt el+ e+L+ kv + + ++ + i+e+ +i++++P++Lp +k + ++ +fF+k +++y g+rk+r+ Traes_2DL_AE270CBAA1.1 62 LPAGVKFDPTGLELL-EHLEGKVGRVPshdlIDDFIPtIEEAeGICYTHPKNLP-GTKMDGRNNHFFHKISNAYDVGQRKRRKisns 146 799************.99*****999975553333334888878**********.445678999******************85666 PP NAM 78 .....tksgyWkatgkdkevlskkgelvglkktLvfykgrapkge....ktdWvmheyrl 128 + +W++tgk+ke+l+++g +g kk+Lv+ ++++g+ kt+W+mh+y+l Traes_2DL_AE270CBAA1.1 147 dhvvcDVHFRWHKTGKSKEILDNNGVIKGWKKILVLIMRSRKDGVtsrtKTNWTMHQYHL 206 6665433677***************************655555543444*********98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101941 | 3.66E-31 | 51 | 225 | IPR003441 | NAC domain |
PROSITE profile | PS51005 | 26.186 | 62 | 225 | IPR003441 | NAC domain |
Pfam | PF02365 | 4.8E-11 | 63 | 206 | IPR003441 | NAC domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 284 aa Download sequence Send to blast |
DPTVARVAEL STRSAGRALA FISSLVTTVV AVIRNPTHPP PSHIECPNCK YHIDVLSQWP 60 GLPAGVKFDP TGLELLEHLE GKVGRVPSHD LIDDFIPTIE EAEGICYTHP KNLPGTKMDG 120 RNNHFFHKIS NAYDVGQRKR RKISNSDHVV CDVHFRWHKT GKSKEILDNN GVIKGWKKIL 180 VLIMRSRKDG VTSRTKTNWT MHQYHLGVDQ DEKHGELVVS KVFYQSNKDE QPVMCPVNEE 240 SGPFAREIDP TTPMTYPPQP RPPNSSPSRT KQNQKLDVEA RGLS |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_020187626.1 | 0.0 | SUPPRESSOR OF GAMMA RESPONSE 1-like | ||||
TrEMBL | A0A453C7J0 | 0.0 | A0A453C7J0_AEGTS; Uncharacterized protein | ||||
STRING | Traes_2DL_AE270CBAA.1 | 0.0 | (Triticum aestivum) | ||||
STRING | Traes_2DL_AE270CBAA1.1 | 0.0 | (Triticum aestivum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP2110 | 37 | 99 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G56620.1 | 4e-60 | NAC domain containing protein 99 |
Publications ? help Back to Top | |||
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