PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Traes_2DL_AE270CBAA.1
Organism
Triticum aestivum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
Family NAC
Protein Properties Length: 284aa    MW: 31945.3 Da    PI: 8.944
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Traes_2DL_AE270CBAA.1genomeIWGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM89.36.7e-28622061128
                    NAM   1 lppGfrFhPtdeelvveyLkkkvegkk....leleev.ikev.diykvePwdLpkkvkaeekewyfFskrdkkyatgkrknra..... 77 
                            lp+G++F+Pt  el+ e+L+ kv + +    ++ +   i+e+ +i++++P++Lp  +k + ++ +fF+k +++y  g+rk+r+     
  Traes_2DL_AE270CBAA.1  62 LPAGVKFDPTGLELL-EHLEGKVGRVPshdlIDDFIPtIEEAeGICYTHPKNLP-GTKMDGRNNHFFHKISNAYDVGQRKRRKisnsd 147
                            799************.99*****999975553333334888878**********.445678999******************856666 PP

                    NAM  78 ....tksgyWkatgkdkevlskkgelvglkktLvfykgrapkge....ktdWvmheyrl 128
                                  + +W++tgk+ke+l+++g  +g kk+Lv+   ++++g+    kt+W+mh+y+l
  Traes_2DL_AE270CBAA.1 148 hvvcDVHFRWHKTGKSKEILDNNGVIKGWKKILVLIMRSRKDGVtsrtKTNWTMHQYHL 206
                            665433677***************************655555543444*********98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019413.66E-3151225IPR003441NAC domain
PROSITE profilePS5100526.18662225IPR003441NAC domain
PfamPF023654.8E-1163206IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 284 aa     Download sequence    Send to blast
DPTVARVAEL STRSAGRALA FISSLVTTVV AVIRNPTHPP PSHIECPNCK YHIDVLSQWP  60
GLPAGVKFDP TGLELLEHLE GKVGRVPSHD LIDDFIPTIE EAEGICYTHP KNLPGTKMDG  120
RNNHFFHKIS NAYDVGQRKR RKISNSDHVV CDVHFRWHKT GKSKEILDNN GVIKGWKKIL  180
VLIMRSRKDG VTSRTKTNWT MHQYHLGVDQ DEKHGELVVS KVFYQSNKDE QPVMCPVNEE  240
SGPFAREIDP TTPMTYPPQP RPPNSSPSRT KQNQKLDVEA RGLS
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020187626.10.0SUPPRESSOR OF GAMMA RESPONSE 1-like
TrEMBLA0A453C7J00.0A0A453C7J0_AEGTS; Uncharacterized protein
STRINGTraes_2DL_AE270CBAA.10.0(Triticum aestivum)
STRINGTraes_2DL_AE270CBAA1.10.0(Triticum aestivum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP21103799
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G56620.14e-60NAC domain containing protein 99
Publications ? help Back to Top
  1. Brenchley R, et al.
    Analysis of the bread wheat genome using whole-genome shotgun sequencing.
    Nature, 2012. 491(7426): p. 705-10
    [PMID:23192148]