PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Traes_2DL_AD34A7228.2
Organism
Triticum aestivum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
Family bHLH
Protein Properties Length: 424aa    MW: 44403.6 Da    PI: 6.5739
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Traes_2DL_AD34A7228.2genomeIWGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH30.47e-10274321455
                            HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
                    HLH   4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                            +h+ +Er RR++i +++  L++l+P++    +k   Ka +L + ++Y++sLq
  Traes_2DL_AD34A7228.2 274 SHSLAERVRREKIGERMKLLQSLVPSC----NKITGKALMLDEIINYVQSLQ 321
                            8**************************....999*****************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF474591.83E-16268338IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000836.91E-10268325No hitNo description
Gene3DG3DSA:4.10.280.101.4E-16270342IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088815.193270320IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000104.2E-7274321IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003533.6E-9276326IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 424 aa     Download sequence    Send to blast
MANEHFFPGE YFSSGLAAPF LGASYVQPPR SGFEAAAAMA FGLPWAADQH LPVDSSATTA  60
HFDSALSSLV SSPASATAGG GLGFAHGCED DVAIGDLIGR LGSICNGASA NNSCYSTPIS  120
SPPRGAPQAF RGYGAIAALE TGRLSRVSSS KSLVGNTSGV AATAPLDQSA QLEMSPETDS  180
QPATAMQDPH TKKGAAGSAR KRKAAPAKGK AKASLPAVQP SCSMAAINTS PPKRPRVADG  240
GDEENAGAVE EEEKAEPAKD YIHVRARRGQ ATDSHSLAER VRREKIGERM KLLQSLVPSC  300
NKITGKALML DEIINYVQSL QRQVEFLSMK LSTMNPQLEL DEQHIPSKEM NQMAVPGFSY  360
AGSPVAVATG HGHGAELEGT FSWEHDLQSM VQMGGASSSH RQDPQAFYGS GQPATTVNHM  420
KVEP
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK3618140.0AK361814.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv1150A24.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020162176.10.0transcription factor bHLH62-like isoform X1
TrEMBLA0A453BT010.0A0A453BT01_AEGTS; Uncharacterized protein
STRINGTraes_2DL_AD34A7228.20.0(Triticum aestivum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP125472835
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G23690.16e-45bHLH family protein
Publications ? help Back to Top
  1. Brenchley R, et al.
    Analysis of the bread wheat genome using whole-genome shotgun sequencing.
    Nature, 2012. 491(7426): p. 705-10
    [PMID:23192148]