PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Traes_2DL_A86E54838.2
Organism
Triticum aestivum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
Family ARF
Protein Properties Length: 606aa    MW: 67380.8 Da    PI: 5.6682
Description ARF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Traes_2DL_A86E54838.2genomeIWGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B374.51.2e-2376177199
                            EEEE-..-HHHHTT-EE--HHH.HTT......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEE CS
                     B3   1 ffkvltpsdvlksgrlvlpkkfaeeh......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvF 82 
                            f+k+lt sd++++g +++ +++aee+      ++++++ ++l+ +d++g  W +++i+r++++r++lt+GW+ Fv++++L +gD ++F
  Traes_2DL_A86E54838.2  76 FCKTLTASDTSTHGGFSVLRRHAEEClppldmSQNPPC-QELVAKDLHGTDWHFRHIFRGQPRRHLLTTGWSVFVSSKRLVAGDAFIF 162
                            99*****************************7556666.59*********************************************** PP

                            EE-SSSEE..EEEEE-S CS
                     B3  83 kldgrsefelvvkvfrk 99 
                               + +++el+v+v+r+
  Traes_2DL_A86E54838.2 163 L--RGENGELRVGVRRH 177
                            *..449999******96 PP
2Auxin_resp98.59.7e-33202287183
             Auxin_resp   1 aahaastksvFevvYnPrastseFvvkvekvekalkvkvsvGmRfkmafetedsserrlsGtvvgvsd...ldpvrWpnSkWrsLk 83 
                            a+ha+st++ F+v+Y+Pr+s+seFvv+v+k+++a k+++svGmRfkm+fe++++ err+sGt++g+     ++++ W +S W+sLk
  Traes_2DL_A86E54838.2 202 ASHAISTGTLFSVFYKPRTSQSEFVVSVNKYLEAKKQNISVGMRFKMKFEGDEALERRFSGTIIGIGStpmVSTSLWADSDWKSLK 287
                            789**************************************************************98622256678********96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019367.59E-4563205IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.101.8E-4174191IPR015300DNA-binding pseudobarrel domain
CDDcd100171.31E-2174176No hitNo description
SMARTSM010194.0E-2176178IPR003340B3 DNA binding domain
PROSITE profilePS5086311.61776178IPR003340B3 DNA binding domain
PfamPF023622.5E-2176177IPR003340B3 DNA binding domain
PfamPF065072.4E-31202287IPR010525Auxin response factor
PROSITE profilePS5174522.636484577IPR000270PB1 domain
SuperFamilySSF542771.96E-10487563No hitNo description
PfamPF023096.2E-8531575IPR033389AUX/IAA domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009734Biological Processauxin-activated signaling pathway
GO:0010150Biological Processleaf senescence
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0042802Molecular Functionidentical protein binding
Sequence ? help Back to Top
Protein Sequence    Length: 606 aa     Download sequence    Send to blast
MEQLEASTNQ QLDQYLPMFN LPSKILCSVV NVELRTEADS DEVYAQIMLQ PEANQGELTS  60
LGPEPQELEK GTIHSFCKTL TASDTSTHGG FSVLRRHAEE CLPPLDMSQN PPCQELVAKD  120
LHGTDWHFRH IFRGQPRRHL LTTGWSVFVS SKRLVAGDAF IFLRGENGEL RVGVRRHMRQ  180
VNNMPSSVIS SHSMHLGVLA TASHAISTGT LFSVFYKPRT SQSEFVVSVN KYLEAKKQNI  240
SVGMRFKMKF EGDEALERRF SGTIIGIGST PMVSTSLWAD SDWKSLKVQW DEPSSILRPD  300
RVSPWELEPL DAANPQPPQP PLRNKRPRLP ASPSVVPELA PKFGLWKSPA EPSQTLSFSE  360
PQQARGLFTN SRFSSSSNVA FNQFYWPARE SREDSYAGST NKVTVERKLE PAAGGCRLFG  420
IEIRSAVDET QPVLTVSGDG YDQTAASVDV DSGELSQPSN INNSGAQAAS SERALLETQS  480
RQVRSCTKVI MTGMAVGRAV DLTKLYGYVD LHCKLEEMFD IQGELCSTLK KWQVVYADEE  540
DDMMLVGDDP WDEFCNMAKR IYIYTYEEAK QLAPKATKLS RVNSSHESVT PQSGSDYPAS  600
FANADC
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4ldv_A1e-174131249357Auxin response factor 1
4ldw_A1e-174131249357Auxin response factor 1
4ldw_B1e-174131249357Auxin response factor 1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtAuxin response factors (ARFs) are transcriptional factors that bind specifically to the DNA sequence 5'-TGTCTC-3' found in the auxin-responsive promoter elements (AuxREs).
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK2516660.0AK251666.1 Hordeum vulgare subsp. vulgare cDNA clone: FLbaf119n03, mRNA sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020162394.10.0auxin response factor 9
SwissprotQ0JCZ40.0ARFI_ORYSJ; Auxin response factor 9
TrEMBLA0A1D5UKY60.0A0A1D5UKY6_WHEAT; Auxin response factor
STRINGTraes_2DL_A86E54838.20.0(Triticum aestivum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP108236116
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G59750.40.0auxin response factor 1
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]
  2. Brenchley R, et al.
    Analysis of the bread wheat genome using whole-genome shotgun sequencing.
    Nature, 2012. 491(7426): p. 705-10
    [PMID:23192148]