PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Traes_2DL_A84C58DC2.1
Organism
Triticum aestivum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
Family bHLH
Protein Properties Length: 361aa    MW: 38740.4 Da    PI: 6.1827
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Traes_2DL_A84C58DC2.1genomeIWGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH55.31.1e-17171217455
                            HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
                    HLH   4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                             hn+ Er+RRdriN+++  L+el+P++      K +Ka+iL +A+eY+ksLq
  Traes_2DL_A84C58DC2.1 171 VHNQSERKRRDRINEKMKALQELVPHC-----NKSDKASILDEAIEYLKSLQ 217
                            6*************************8.....6******************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000831.13E-17163221No hitNo description
SuperFamilySSF474597.98E-21165233IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088818.292167216IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.101.2E-20171226IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000104.6E-15171217IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003532.5E-18173222IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 361 aa     Download sequence    Send to blast
MDDGARPAPN HKRHLPLQEA GGELVELLWQ DGAIVAQAQA QTPHRRFPQS GAASGVTAED  60
AAAWLIPDGG GGRDLYSHLW HGVVDGDAGA LVAGSGAGTS FCGSNAVTAP ALLPSPEEEP  120
GSSSAGGQAL LSKRGRDELG SHREDADDCE AVNETRPQRP AAKRRTRAAE VHNQSERKRR  180
DRINEKMKAL QELVPHCNKS DKASILDEAI EYLKSLQLQV QIMWMTTGMA PMMYPGAHQL  240
MPPMAMGLNA ACMPATQSLS QLQRIAPFMN HHLPNQMPRV QSPAIDSLNV ANQMQNNGVC  300
GEPRNPFLHP DDTLTAASQL PDMFPYASQK AQQNQNHQLL PNTDMPASGP CPPSFADGTG  360
T
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1162179KRRTRAAEVHNQSERKRR
2175180ERKRRD
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor that may act as negative regulator of phyB-dependent light signal transduction (PubMed:17485859). Transcription activator that acts as positive regulator of internode elongation. May function via regulation of cell wall-related genes. May play a role in a drought-associated growth-restriction mechanism in response to drought stress (PubMed:22984180). {ECO:0000269|PubMed:17485859, ECO:0000269|PubMed:22984180}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced by light in dark-grown etiolated seedlings (PubMed:17485859). Circadian oscillation under 12 h light/12 h dark cycle conditions, with peaks in the middle of the light period (PubMed:17485859, PubMed:22984180). Down-regulated by cold and drought stresses (PubMed:22984180). {ECO:0000269|PubMed:17485859, ECO:0000269|PubMed:22984180}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020181578.10.0transcription factor PIF1-like
SwissprotQ10CH53e-94PIL13_ORYSJ; Transcription factor PHYTOCHROME INTERACTING FACTOR-LIKE 13
TrEMBLA0A1D5UGJ30.0A0A1D5UGJ3_WHEAT; Uncharacterized protein
TrEMBLA0A453BNA60.0A0A453BNA6_AEGTS; Uncharacterized protein
STRINGTraes_2DL_A84C58DC2.10.0(Triticum aestivum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP31743482
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G20180.11e-32phytochrome interacting factor 3-like 5
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]
  2. Nakamura Y,Kato T,Yamashino T,Murakami M,Mizuno T
    Characterization of a set of phytochrome-interacting factor-like bHLH proteins in Oryza sativa.
    Biosci. Biotechnol. Biochem., 2007. 71(5): p. 1183-91
    [PMID:17485859]
  3. Zhao XL,Shi ZY,Peng LT,Shen GZ,Zhang JL
    An atypical HLH protein OsLF in rice regulates flowering time and interacts with OsPIL13 and OsPIL15.
    N Biotechnol, 2011. 28(6): p. 788-97
    [PMID:21549224]
  4. Todaka D, et al.
    Rice phytochrome-interacting factor-like protein OsPIL1 functions as a key regulator of internode elongation and induces a morphological response to drought stress.
    Proc. Natl. Acad. Sci. U.S.A., 2012. 109(39): p. 15947-52
    [PMID:22984180]
  5. Brenchley R, et al.
    Analysis of the bread wheat genome using whole-genome shotgun sequencing.
    Nature, 2012. 491(7426): p. 705-10
    [PMID:23192148]