PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Traes_2DL_A03AB7608.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
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Family | MYB | ||||||||
Protein Properties | Length: 133aa MW: 15304.5 Da PI: 10.2493 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 63.9 | 3.1e-20 | 7 | 54 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 rg WT+eEd +l+ +++q+G+++W++I++ g+ R++k+c++rw +yl Traes_2DL_A03AB7608.1 7 RGQWTPEEDNKLLSYITQHGTRNWRLIPKNAGLQRCGKSCRLRWTNYL 54 89********************************************97 PP | |||||||
2 | Myb_DNA-binding | 45.1 | 2.4e-14 | 61 | 103 | 2 | 46 |
SSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS Myb_DNA-binding 2 grWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 g +T E++ +++++ G + W+ Ia+ ++ gRt++++k++w++ Traes_2DL_A03AB7608.1 61 GEFTDAEEQTIIKLHSVVGCR-WSVIAAQLP-GRTDNDVKNHWNT 103 78*****************99.*********.***********97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51294 | 26.91 | 2 | 58 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 1.1E-29 | 4 | 101 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 4.0E-14 | 6 | 56 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 5.5E-18 | 7 | 54 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 4.7E-26 | 8 | 61 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 5.84E-12 | 10 | 54 | No hit | No description |
SMART | SM00717 | 2.5E-13 | 59 | 107 | IPR001005 | SANT/Myb domain |
PROSITE profile | PS51294 | 18.549 | 59 | 109 | IPR017930 | Myb domain |
Pfam | PF00249 | 6.3E-13 | 61 | 103 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 3.73E-9 | 62 | 105 | No hit | No description |
Gene3D | G3DSA:1.10.10.60 | 1.8E-24 | 62 | 109 | IPR009057 | Homeodomain-like |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 133 aa Download sequence Send to blast |
EKDNVKRGQW TPEEDNKLLS YITQHGTRNW RLIPKNAGLQ RCGKSCRLRW TNYLRPDLKH 60 GEFTDAEEQT IIKLHSVVGC RWSVIAAQLP GRTDNDVKNH WNTKLKKKLS GMGIDPVTHK 120 SFSHLMAEIA TTL |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1a5j_A | 1e-29 | 7 | 109 | 7 | 108 | B-MYB |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Essential for tapetum development in anthers and microsporogenesis. May regulate the timing of tapetal programmed cell death (PCD) which is critical for pollen development. {ECO:0000269|PubMed:22086333}. |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | BT034238 | 1e-173 | BT034238.1 Zea mays full-length cDNA clone ZM_BFc0028K07 mRNA, complete cds. | |||
GenBank | BT039422 | 1e-173 | BT039422.1 Zea mays full-length cDNA clone ZM_BFc0012M19 mRNA, complete cds. | |||
GenBank | BT040670 | 1e-173 | BT040670.1 Zea mays full-length cDNA clone ZM_BFc0113I05 mRNA, complete cds. | |||
GenBank | BT043240 | 1e-173 | BT043240.1 Zea mays full-length cDNA clone ZM_BFc0129J22 mRNA, complete cds. | |||
GenBank | BT054988 | 1e-173 | BT054988.1 Zea mays full-length cDNA clone ZM_BFc0168O09 mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_020149048.1 | 2e-93 | transcription factor MYB80 | ||||
Swissprot | Q7XQN1 | 3e-94 | MYB80_ORYSJ; Transcription factor MYB80 | ||||
TrEMBL | A0A453C6U4 | 6e-94 | A0A453C6U4_AEGTS; Uncharacterized protein | ||||
STRING | Traes_2DL_A03AB7608.1 | 5e-96 | (Triticum aestivum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP10867 | 33 | 39 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G56110.1 | 1e-86 | myb domain protein 103 |
Publications ? help Back to Top | |||
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