PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Traes_2DL_9DD224B48.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
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Family | bHLH | ||||||||
Protein Properties | Length: 467aa MW: 51924.1 Da PI: 5.1206 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 33 | 1.1e-10 | 266 | 312 | 3 | 54 |
HHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS HLH 3 rahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 +a+ + Er RR+++N ++ +Lr l P++ +K++ a+++ A+eYI +L Traes_2DL_9DD224B48.1 266 KANFATERERREQLNVKYKTLRMLFPNP-----TKNDRASVVGDAIEYIDEL 312 68899***********************.....9***************998 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50888 | 13.16 | 263 | 312 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Pfam | PF00010 | 5.9E-8 | 266 | 312 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SuperFamily | SSF47459 | 3.14E-11 | 266 | 329 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SMART | SM00353 | 2.4E-7 | 269 | 318 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene3D | G3DSA:4.10.280.10 | 3.7E-9 | 270 | 321 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
CDD | cd00083 | 1.90E-7 | 272 | 317 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 467 aa Download sequence Send to blast |
MIVGGDYFEG SHDHNLMTGS LTHDSSLAPK CNDNTNIELQ RFKVQSFSAD ILSDSTNLSS 60 EAARAINHLQ HQLGIGLEQD MPPVETATWD TSICTIQDQI INHQLSEDPQ NILVQQQIQQ 120 YDAALYPNSG YTPAPDLLNL LHCTVAPVFP ATASVFGDTA LSGGTNYLDL NGEFTGVAAI 180 PDSGLMYTSD PALQLGYHAA PSHALKDICH SLPQNYGLFP SEDERDVMLG VGSVGGDLFQ 240 DMDDRQFETV LEGRRGKGEF GKGKGKANFA TERERREQLN VKYKTLRMLF PNPTKNDRAS 300 VVGDAIEYID ELNRTVKELK ILVEQKWHGT NRRRTRKLDE EAAADGESSS MRPMRDEQDN 360 QLDGAIRSSW VQRRSRECHV DVRIVENEIN IKLTEKKKAN SSLLHVAKVL DEFHLEIIHV 420 VGGIIGDHYI FMFNTKVTEG SSVYACAVAK RILQAVDAQH QALDIFN |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor involved in the regulation of tapetum programmed cell death (PCD) and degradation during male reproductive development (PubMed:23519457, PubMed:23385589). Interacts with TDR and promote tapetal PCD by regulating the expression of RTS, and the two lipid-transfer proteins C4 and C6, which function in microspore development (PubMed:23519457). Acts downstream from and interacts with TDR in the regulation of tapetal PCD. Regulates directly the aspartic protease AP25 and AP37 during tapetal PCD (PubMed:23385589). May not target the cysteine protease CP1 (PubMed:23519457, PubMed:23385589). {ECO:0000269|PubMed:23385589, ECO:0000269|PubMed:23519457}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_020152149.1 | 0.0 | transcription factor EAT1-like | ||||
Swissprot | Q7X8R0 | 0.0 | EAT1_ORYSJ; Transcription factor EAT1 | ||||
TrEMBL | A0A2X0U032 | 0.0 | A0A2X0U032_WHEAT; Uncharacterized protein | ||||
STRING | Traes_2DL_9DD224B48.1 | 0.0 | (Triticum aestivum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP1904 | 37 | 96 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G31210.1 | 5e-44 | bHLH family protein |
Publications ? help Back to Top | |||
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