PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Traes_2DL_9071B96BD.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
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Family | FAR1 | ||||||||
Protein Properties | Length: 591aa MW: 67509.7 Da PI: 7.8052 | ||||||||
Description | FAR1 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | FAR1 | 73.3 | 5.4e-23 | 41 | 133 | 1 | 91 |
FAR1 1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkk...tekerrtraetrtgCkaklkvkkekdgkwevtkleleH 85 +fY++YA+++GFsvr+ + k +n+ + +++f+Cs+eg+r+++ +++r+ r++tr+gC+a++ vk+ +d+k+++t+ ++H Traes_2DL_9071B96BD.1 41 EFYKSYAHHCGFSVRVGQRKLL-NNEVVQWKRFMCSREGFRSDKCMGvddPSRKRKVRKVTRCGCDARIIVKRCTDNKYKITSWIEHH 127 6****************97766.8999***************99877777889999******************************** PP FAR1 86 nHelap 91 nH ++p Traes_2DL_9071B96BD.1 128 NHGFVP 133 **9875 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF03101 | 1.0E-20 | 41 | 133 | IPR004330 | FAR1 DNA binding domain |
Pfam | PF10551 | 1.7E-22 | 253 | 343 | IPR018289 | MULE transposase domain |
PROSITE profile | PS50966 | 9.52 | 522 | 571 | IPR007527 | Zinc finger, SWIM-type |
SMART | SM00575 | 1.7E-4 | 546 | 573 | IPR006564 | Zinc finger, PMZ-type |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0008270 | Molecular Function | zinc ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 591 aa Download sequence Send to blast |
MHHGTYCSGF LMLQSSLAPE CDEALKPSVG MVFEDIGSVE EFYKSYAHHC GFSVRVGQRK 60 LLNNEVVQWK RFMCSREGFR SDKCMGVDDP SRKRKVRKVT RCGCDARIIV KRCTDNKYKI 120 TSWIEHHNHG FVPPDKCHLI RSNRQLSDKV KPTVSTHCKA SSGTSQANKP DHVSEGRSDN 180 VGCTKRDLQK YHHDLCSKIK NEDAQIFVAQ LCRKQQEDSA FFFDCDVDDQ GMLVHVFWAD 240 ATSRKNYIYF GDILTFDSTN TMNQHGMIFA PFTGTNHHLQ SVLFGAAFLA DEKIESYAWL 300 FQTFLRAMGG VSPKTIVTRE NDRMKAAISN VLPATSHRLC MLEMLERMPE KVEPSLRNNP 360 LFQTRMNECV LGSETVFEFE SKWESIISDF GLQGNQWLAE RYSTRERWIL AYSRDTHLSG 420 IIRSTAWSKS AKSFFNCFIN QKLSLAEFWL RFESALECQR QEESNADHTS AYATPQLITP 480 WGLEKHGSVV FTHEVFERFQ EEIVAARDHC VVEDMAQTEG VKTVAIGGDD SDKVREVRWD 540 AVTMTANCSC KLFESVGISC RHINLVLRSS KLNELPSSCV LKRWQKSAKF G |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_020161160.1 | 0.0 | protein FAR1-RELATED SEQUENCE 7-like | ||||
TrEMBL | A0A453C9N5 | 0.0 | A0A453C9N5_AEGTS; Uncharacterized protein | ||||
STRING | Traes_2DL_9071B96BD.1 | 0.0 | (Triticum aestivum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP18 | 32 | 967 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G38180.1 | 1e-108 | FAR1-related sequence 5 |
Publications ? help Back to Top | |||
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