PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Traes_2DL_8F24AEC6D.3
Organism
Triticum aestivum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
Family NAC
Protein Properties Length: 406aa    MW: 42952.8 Da    PI: 5.1346
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Traes_2DL_8F24AEC6D.3genomeIWGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM1577.9e-4961331128
                    NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLp.k.kvkaeekewyfFskrdkkyatgkrknratksgyWkat 86 
                            lppG+rFhPtd el  +yLk+k+ gkkl + ++++evdiyk+ PwdLp k ++ +++ +wyfF++r +ky+ g+r+nr+t+ gyWkat
  Traes_2DL_8F24AEC6D.3   6 LPPGYRFHPTDVELTLYYLKRKLLGKKLLC-NAVAEVDIYKHAPWDLPaKsSMPTGDLQWYFFCTRGRKYSVGHRANRSTEGGYWKAT 92 
                            79*************************999.88***************4246666888****************************** PP

                    NAM  87 gkdkevlskkgelvglkktLvfykgrapkgektdWvmheyrl 128
                            gkd++v+  ++++vg+k+tLvf++g+apkg++tdWvm eyrl
  Traes_2DL_8F24AEC6D.3  93 GKDRQVVY-ENRTVGMKRTLVFHSGKAPKGTRTDWVMYEYRL 133
                            ********.9999***************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019412.09E-582156IPR003441NAC domain
PROSITE profilePS5100554.1836156IPR003441NAC domain
PfamPF023654.6E-257133IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 406 aa     Download sequence    Send to blast
MEMPPLPPGY RFHPTDVELT LYYLKRKLLG KKLLCNAVAE VDIYKHAPWD LPAKSSMPTG  60
DLQWYFFCTR GRKYSVGHRA NRSTEGGYWK ATGKDRQVVY ENRTVGMKRT LVFHSGKAPK  120
GTRTDWVMYE YRLVQGEIPD AGVRLDDSVL CKVHKKSGPG PKIGEQYGAP FEEQEEELND  180
ANGDASCLSP SAPPAAPHSA PGPSHGGVLN SVGQQLAGVS NGGGVSLSLL AANNGGTSGA  240
RPDRASHPDV NWDSIHVEQL ADIIGRLSTN PVGQDGPSSD LTTANQDSEA VFDDSETIFE  300
ITDQVVPSSL VSSLCKQCDK CGVRLVDPLL EPAAGEPYVE LNDLLSQCRA AGHAPDGSSS  360
QAVVVSNGEG PALDLELKLG VESSDSVGHS SGAVSAAASG SGAPSS
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ut4_A3e-48616217171NO APICAL MERISTEM PROTEIN
1ut4_B3e-48616217171NO APICAL MERISTEM PROTEIN
1ut7_A3e-48616217171NO APICAL MERISTEM PROTEIN
1ut7_B3e-48616217171NO APICAL MERISTEM PROTEIN
3swm_A3e-48616220174NAC domain-containing protein 19
3swm_B3e-48616220174NAC domain-containing protein 19
3swm_C3e-48616220174NAC domain-containing protein 19
3swm_D3e-48616220174NAC domain-containing protein 19
3swp_A3e-48616220174NAC domain-containing protein 19
3swp_B3e-48616220174NAC domain-containing protein 19
3swp_C3e-48616220174NAC domain-containing protein 19
3swp_D3e-48616220174NAC domain-containing protein 19
4dul_A3e-48616217171NAC domain-containing protein 19
4dul_B3e-48616217171NAC domain-containing protein 19
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK3707770.0AK370777.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv2116L22.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020181654.10.0NAC domain-containing protein 82-like
RefseqXP_020181655.10.0NAC domain-containing protein 82-like
TrEMBLA0A453DMI00.0A0A453DMI0_AEGTS; Uncharacterized protein
TrEMBLM8BIN20.0M8BIN2_AEGTA; NAC domain-containing protein 78
TrEMBLW5BXE90.0W5BXE9_WHEAT; Uncharacterized protein
STRINGEMT066130.0(Aegilops tauschii)
STRINGTraes_2DL_8F24AEC6D.30.0(Triticum aestivum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP148561721
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G64060.17e-58NAC domain containing protein 103
Publications ? help Back to Top
  1. Brenchley R, et al.
    Analysis of the bread wheat genome using whole-genome shotgun sequencing.
    Nature, 2012. 491(7426): p. 705-10
    [PMID:23192148]