PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Traes_2DL_8BE259F4B.1
Organism
Triticum aestivum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
Family bHLH
Protein Properties Length: 272aa    MW: 29656.7 Da    PI: 4.5241
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Traes_2DL_8BE259F4B.1genomeIWGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH37.34.9e-1277123455
                            HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
                    HLH   4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                            ++ ++Er RR+r+N+++ +Lr ++P+      +K++Ka+i + A+ YI  Lq
  Traes_2DL_8BE259F4B.1  77 KNIIMERDRRRRLNEKLYNLRGVVPNI-----TKMDKASIIQDAIAYIEALQ 123
                            56689*********************7.....7*****************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF474596.15E-1773140IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088815.67573122IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000831.11E-1374127No hitNo description
PfamPF000109.8E-1077123IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.102.3E-1578138IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003532.1E-1479128IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 272 aa     Download sequence    Send to blast
MEADMDMSFD FSWETPNFFE AQVLELGVVD SLVDCSSMYL PAEDSLSGLY SCYDDSSSPD  60
GASSWSSAMT RATRASKNII MERDRRRRLN EKLYNLRGVV PNITKMDKAS IIQDAIAYIE  120
ALQEQERQLL AEISDLEPDN CTAAVKAEDV ASVGSQAEED GVGLPRQKKM RRTSSASSIN  180
DAITSPATYP VEILELEVTN VAEKLSVVSL RHGKARDAMA KVCGALQSLC LKVITASVTT  240
VAGGMVHTMF VEVTIHRFAV FPTQSIAPLA LS
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK3598500.0AK359850.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv1104J03.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020176410.11e-179transcription factor bHLH35-like isoform X2
TrEMBLA0A453BRV90.0A0A453BRV9_AEGTS; Uncharacterized protein
STRINGTraes_2DL_8BE259F4B.10.0(Triticum aestivum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP104438133
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G57150.27e-44bHLH family protein
Publications ? help Back to Top
  1. Brenchley R, et al.
    Analysis of the bread wheat genome using whole-genome shotgun sequencing.
    Nature, 2012. 491(7426): p. 705-10
    [PMID:23192148]