PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Traes_2DL_8BD9DC3DF.3
Organism
Triticum aestivum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
Family NAC
Protein Properties Length: 337aa    MW: 37070.1 Da    PI: 8.2955
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Traes_2DL_8BD9DC3DF.3genomeIWGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM119.14.1e-37151341105
                    NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpk..............kvka...eekewyfFskrdkkyatg 71 
                            +ppGfrFhPt+eelv +yL++kv+++k++l ++i+evd+y++ePwdL++              +  a   +++ewyfFs +d+ky++g
  Traes_2DL_8BD9DC3DF.3  15 VPPGFRFHPTEEELVGYYLARKVAAQKIDL-DIIQEVDLYRIEPWDLQErcgggrggrgarqvA--AedeQSSEWYFFSFKDRKYPSG 99 
                            69****************************.99**************95689999999988542..3222445*************** PP

                    NAM  72 krknratksgyWkatgkdkevlsk.kgelvglkkt 105
                            +r+nrat++g+Wkatg+dk+v+s+ ++ ++g++kt
  Traes_2DL_8BD9DC3DF.3 100 TRTNRATAAGFWKATGRDKPVTSSsSRGVIGMRKT 134
                            **********************98666789**997 PP
2NAM661.1e-2013318973128
                    NAM  73 rknratksgyWkatgkdkevlsk.kgelvglkktLvfykgrapkgektdWvmheyrl 128
                            ++ rat++g+Wka g+dk+v+s+ ++ ++g++ktLvfy+grap+g+ktdW++heyrl
  Traes_2DL_8BD9DC3DF.3 133 KTXRATAAGFWKAPGRDKPVTSSsSRGVIGMRKTLVFYRGRAPNGRKTDWIIHEYRL 189
                            6789*****************9866778***************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019415.1E-3610134IPR003441NAC domain
PROSITE profilePS5100550.5115210IPR003441NAC domain
PfamPF023651.9E-1716134IPR003441NAC domain
PfamPF023654.5E-9134189IPR003441NAC domain
SuperFamilySSF1019413.27E-24134210IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 337 aa     Download sequence    Send to blast
MLAMDQHNHQ EESCVPPGFR FHPTEEELVG YYLARKVAAQ KIDLDIIQEV DLYRIEPWDL  60
QERCGGGRGG RGARQVAAED EQSSEWYFFS FKDRKYPSGT RTNRATAAGF WKATGRDKPV  120
TSSSSRGVIG MRKTXRATAA GFWKAPGRDK PVTSSSSRGV IGMRKTLVFY RGRAPNGRKT  180
DWIIHEYRLQ TSEHAPTQEE GWVVCRAFQK PTPNQRPSYI FPAYAAAPGL GGYYEARPWL  240
HGQGGDLHYL QSATCAAGAG GLGFPGQGIQ YSDDLLESKQ SLFGNIPQLI ESPPTTTAVA  300
GGGDAGYDVV QQGQAAAGID WNFLDSLLST SQLHLQQ
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3ulx_A1e-4462106168Stress-induced transcription factor NAC1
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK3677890.0AK367789.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv2062C13.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020184116.10.0NAC domain-containing protein 30-like
RefseqXP_020184117.10.0NAC domain-containing protein 30-like
TrEMBLA0A453DKV10.0A0A453DKV1_AEGTS; Uncharacterized protein
STRINGTraes_2DL_8BD9DC3DF.30.0(Triticum aestivum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP25943791
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G71930.12e-77vascular related NAC-domain protein 7
Publications ? help Back to Top
  1. Brenchley R, et al.
    Analysis of the bread wheat genome using whole-genome shotgun sequencing.
    Nature, 2012. 491(7426): p. 705-10
    [PMID:23192148]