PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Traes_2DL_86AF9114B.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
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Family | MYB_related | ||||||||
Protein Properties | Length: 100aa MW: 11262.9 Da PI: 6.5021 | ||||||||
Description | MYB_related family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 30.4 | 9.2e-10 | 35 | 58 | 23 | 47 |
-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 23 tWktIartmgkgRtlkqcksrwqky 47 +W+tIa ++ gRt++++k++w+++ Traes_2DL_86AF9114B.1 35 RWATIATHLE-GRTDNEIKNYWNTH 58 6*********.************97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.10.10.60 | 5.7E-13 | 34 | 75 | IPR009057 | Homeodomain-like |
SuperFamily | SSF46689 | 1.25E-8 | 34 | 67 | IPR009057 | Homeodomain-like |
PROSITE profile | PS50090 | 6.365 | 35 | 59 | IPR017877 | Myb-like domain |
CDD | cd00167 | 5.06E-7 | 35 | 59 | No hit | No description |
Pfam | PF00249 | 3.6E-7 | 35 | 58 | IPR001005 | SANT/Myb domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 100 aa Download sequence Send to blast |
RHALSSVNFF TVGFCIVVSL EETLTCMDNY LVDVRWATIA THLEGRTDNE IKNYWNTHIR 60 KKLLRMGVDP VTHQQLPPDH HLDGASAPLL PEALLWAAAA |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor that may function in osmotic stress and wounding signaling pathways (Probable). Contributes to basal resistance against the herbivore Pieris rapae (white cabbage butterfly) feeding (PubMed:19517001). {ECO:0000269|PubMed:19517001, ECO:0000305|PubMed:12857823}. |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Induced by light (PubMed:8980549). Induced by wounding, salt stress and abscisic acid (PubMed:12857823). Induced by the lepidopteran herbivore Pieris rapae (white cabbage butterfly) feeding (PubMed:19517001). {ECO:0000269|PubMed:12857823, ECO:0000269|PubMed:19517001, ECO:0000269|PubMed:8980549}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AF470090 | 4e-49 | AF470090.1 Zea mays P-type R2R3 Myb protein (Myb49) gene, complete cds. | |||
GenBank | BT034484 | 4e-49 | BT034484.1 Zea mays full-length cDNA clone ZM_BFc0173K04 mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_020169249.1 | 2e-40 | transcription factor MYB39-like | ||||
Refseq | XP_020198492.1 | 2e-40 | transcription factor MYB39-like | ||||
Swissprot | Q9LDR8 | 6e-18 | MY102_ARATH; Transcription factor MYB102 | ||||
TrEMBL | A0A453CWB1 | 1e-47 | A0A453CWB1_AEGTS; Uncharacterized protein | ||||
STRING | Traes_2DL_86AF9114B.1 | 1e-69 | (Triticum aestivum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP79 | 38 | 563 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G54230.1 | 1e-20 | myb domain protein 49 |
Publications ? help Back to Top | |||
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