PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Traes_2DL_865346DA2.2
Organism
Triticum aestivum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
Family bHLH
Protein Properties Length: 247aa    MW: 27220.1 Da    PI: 7.2347
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Traes_2DL_865346DA2.2genomeIWGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH43.65.2e-1475127155
                            CHHHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
                    HLH   1 rrrahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                            ++ +hn+ Er RR+++N+ +  Lr+llP a   + kKls  +++ +A +YI +Lq
  Traes_2DL_865346DA2.2  75 KKLSHNAYERDRRKQLNELYLSLRSLLPDA--DHTKKLSIPTTVCRALKYIPELQ 127
                            6789*************************7..35666***************998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF474597.59E-1772142IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088813.87874126IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000838.92E-1174131No hitNo description
PfamPF000104.1E-1175127IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.101.7E-1275141IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003532.8E-980132IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0010106Biological Processcellular response to iron ion starvation
GO:0055072Biological Processiron ion homeostasis
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 247 aa     Download sequence    Send to blast
MDHQLYGDPS ANSFSPLEAQ IFSGQLPLSP PWQNIDVDVD LDLDVLEDDI VRELSGRPAN  60
AASSGSGSGS PGSHKKLSHN AYERDRRKQL NELYLSLRSL LPDADHTKKL SIPTTVCRAL  120
KYIPELQKQV ENLEKKKEKL ASANCKPGVL SASGSIAPTV SATCLNDKEI MVQISLLRGT  180
DAATALPLSK CINVLENEGL QLISSSTSST FGNKMFYNLH LQVNLFLLIL IIRWMHTTHT  240
TIIYKHI
Functional Description ? help Back to Top
Source Description
UniProtTranscription activator that binds to the DNA motif 5'-CACGTGG-3' in the promoter of iron (Fe) deficiency-inducible genes as well as of genes involved in iron homeostasis, thus contributing to basal tolerance to iron deficiency, iron uptake from soil and iron transport, particularly during seed maturation and germination. Promotes the accumulation of mugineic acid family phytosiderophores (MAs). Required for ethylene-mediated signaling during iron deficiency responses. Improves growth and yield, especially in calcareous soil with low iron availability. Promotes iron concentration in shoots and grain. {ECO:0000250|UniProtKB:Q0JFZ0}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK3624260.0AK362426.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv2005A04.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020153147.11e-134transcription factor bHLH100-like
SwissprotA2WZ601e-78IRO2_ORYSI; Protein IRON-RELATED TRANSCRIPTION FACTOR 2
TrEMBLA0A3B6DLL21e-161A0A3B6DLL2_WHEAT; Uncharacterized protein
STRINGTraes_2DL_865346DA2.20.0(Triticum aestivum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP32803472
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G56970.11e-28bHLH family protein
Publications ? help Back to Top
  1. Brenchley R, et al.
    Analysis of the bread wheat genome using whole-genome shotgun sequencing.
    Nature, 2012. 491(7426): p. 705-10
    [PMID:23192148]