PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Traes_2DL_8434C0251.2
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
Family ARF
Protein Properties Length: 741aa    MW: 82918.6 Da    PI: 6.4236
Description ARF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Traes_2DL_8434C0251.2genomeIWGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B3733.6e-2344145199
                            EEEE-..-HHHHTT-EE--HHH.HTT.......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEE CS
                     B3   1 ffkvltpsdvlksgrlvlpkkfaeeh.......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvv 81 
                            f+k+lt sd++++g +++p++ ae+        ++++++  +l+ +d +  +W++++i+r++++r++lt+GW+ Fv+a++L +gD+v+
  Traes_2DL_8434C0251.2  44 FCKTLTASDTSTHGGFSVPRRAAERVfppldftQQPPAQ--ELIARDIHDVEWKFRHIFRGQPKRHLLTTGWSVFVSAKRLVAGDSVL 129
                            99***********************9*****86555544..8********************************************** PP

                            EEE-SSSEE..EEEEE-S CS
                     B3  82 Fkldgrsefelvvkvfrk 99 
                            F   ++++ +l+++++r+
  Traes_2DL_8434C0251.2 130 FI--WNEKNQLWLGIRRA 145
                            **..8999999*****97 PP

2Auxin_resp110.61.6e-36170253183
             Auxin_resp   1 aahaastksvFevvYnPrastseFvvkvekvekalk.vkvsvGmRfkmafetedsserrlsGtvvgvsdldpvrWpnSkWrsLk 83 
                            aahaast+s F+++YnPra++seFv++++k+ ka+  +++svGmRf+m fete+ss rr++Gt++ vsd+dpvrW  S Wrs+k
  Traes_2DL_8434C0251.2 170 AAHAASTNSRFTIFYNPRACPSEFVIPLSKYIKAVFhTRISVGMRFRMLFETEESSVRRYMGTITEVSDADPVRWASSYWRSVK 253
                            79*******************************986599******************************************985 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019363.79E-4829173IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.101.3E-4036159IPR015300DNA-binding pseudobarrel domain
CDDcd100171.49E-2143144No hitNo description
PfamPF023621.3E-2144145IPR003340B3 DNA binding domain
SMARTSM010198.2E-2444146IPR003340B3 DNA binding domain
PROSITE profilePS5086312.08344146IPR003340B3 DNA binding domain
PfamPF065071.0E-31170253IPR010525Auxin response factor
PfamPF023098.9E-7636729IPR033389AUX/IAA domain
SuperFamilySSF542777.85E-7637717No hitNo description
PROSITE profilePS5174522.709642726IPR000270PB1 domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009734Biological Processauxin-activated signaling pathway
GO:0009908Biological Processflower development
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0005515Molecular Functionprotein binding
Sequence ? help Back to Top
Protein Sequence    Length: 741 aa     Download sequence    Send to blast
MHADVETDEV YAQMTLQPLN PQEQNDAYLP AEMGIMSKQP TNYFCKTLTA SDTSTHGGFS  60
VPRRAAERVF PPLDFTQQPP AQELIARDIH DVEWKFRHIF RGQPKRHLLT TGWSVFVSAK  120
RLVAGDSVLF IWNEKNQLWL GIRRANRTQT VMPSSVLSSD SMHIGLLAAA AHAASTNSRF  180
TIFYNPRACP SEFVIPLSKY IKAVFHTRIS VGMRFRMLFE TEESSVRRYM GTITEVSDAD  240
PVRWASSYWR SVKVGWDEST AGERPPRVSL WEIEPLTTFP MYPSLFPLRV KHPWYSGVAG  300
LQDDSNALMW LRGVAGDGGY QSMNFQSPGI GSWGQQRLHP SLLSTDHDQY QAVVAAAAAA  360
SQSGGYMKQQ FLNLQQPMQS PQEHCNLNPL LQQQILQQAS QQQTVSADSQ NIQAMLNSSA  420
MQHQLQQLQQ LQQVHQVQQA QQAHIDQKQK IQSDQTYHVP TSASLPSPTS LPSHLREKFG  480
FSDPNANSSS FTTSSSSDNM LESNFLQGNS KAVDLSRFNQ PVASDQQQQQ QQQQQQAWKQ  540
KFMGSQSLSF GGSGLLSSPT SKDGSLESKI GSDVQNQSLF SPQVDSSSLL YNMVPNMTSN  600
VADNNMSTIP SGSTYLQSPM YGCLDDSSGI FQNTGENDPT SRTFVKVYKS GSVGRSLDIT  660
RFSNYAELRE ELGQMYGIRG QLDDPDRSGW QLVFVDREND VLLLGDDPWE SFVNSVWYIK  720
ILSPEDVHKL GKQGNDPRYL S
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4ldu_A1e-1241274115388Auxin response factor 5
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtAuxin response factors (ARFs) are transcriptional factors that bind specifically to the DNA sequence 5'-TGTCTC-3' found in the auxin-responsive promoter elements (AuxREs).
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK3583610.0AK358361.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, partial cds, clone: NIASHv1074P07.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020185201.10.0auxin response factor 12
RefseqXP_020185202.10.0auxin response factor 12
SwissprotQ0J9510.0ARFL_ORYSJ; Auxin response factor 12
TrEMBLA0A3B6DNJ00.0A0A3B6DNJ0_WHEAT; Auxin response factor
STRINGTraes_2DL_8434C0251.20.0(Triticum aestivum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP58503039
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G30330.20.0auxin response factor 6
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]
  2. Qi Y, et al.
    OsARF12, a transcription activator on auxin response gene, regulates root elongation and affects iron accumulation in rice (Oryza sativa).
    New Phytol., 2012. 193(1): p. 109-20
    [PMID:21973088]
  3. Shen WJ,Ruan XL,Li XS,Zhao Q,Li HP
    RNA silencing suppressor Pns11 of rice gall dwarf virus induces virus-like symptoms in transgenic rice.
    Arch. Virol., 2012. 157(8): p. 1531-9
    [PMID:22592958]
  4. Brenchley R, et al.
    Analysis of the bread wheat genome using whole-genome shotgun sequencing.
    Nature, 2012. 491(7426): p. 705-10
    [PMID:23192148]
  5. Wang S, et al.
    Auxin response factor (OsARF12), a novel regulator for phosphate homeostasis in rice (Oryza sativa).
    New Phytol., 2014. 201(1): p. 91-103
    [PMID:24111723]
  6. Fan J, et al.
    Infection of Ustilaginoidea virens intercepts rice seed formation but activates grain-filling-related genes.
    J Integr Plant Biol, 2015. 57(6): p. 577-90
    [PMID:25319482]