PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Traes_2DL_7034372AC.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
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Family | MYB_related | ||||||||
Protein Properties | Length: 94aa MW: 10557.7 Da PI: 6.7964 | ||||||||
Description | MYB_related family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 33 | 1.4e-10 | 12 | 53 | 3 | 46 |
SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS Myb_DNA-binding 3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 +WT E +ll+++v ++G + W++I +++ ++ +c+ r+ + Traes_2DL_7034372AC.1 12 AWTDAETLLLLEGVLKHGDD-WDLITQHVR-TKNKTECIARLIQ 53 8*****************88.*********.888888*999866 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51293 | 19.27 | 8 | 59 | IPR017884 | SANT domain |
SuperFamily | SSF46689 | 1.2E-10 | 8 | 65 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 1.7E-6 | 9 | 57 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 2.6E-7 | 10 | 50 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 3.12E-7 | 12 | 50 | No hit | No description |
Pfam | PF00249 | 1.2E-9 | 12 | 53 | IPR001005 | SANT/Myb domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 94 aa Download sequence Send to blast |
KKESSDNHAS SAWTDAETLL LLEGVLKHGD DWDLITQHVR TKNKTECIAR LIQLPFGEHM 60 LGNINNGKSD SRFHTNQTTD GKTNHFIVKE ASSQ |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Component of a multiprotein complex equivalent of the SWI/SNF complex, an ATP-dependent chromatin-remodeling complex, which is required for the positive and negative regulation of gene expression of a large number of genes. It changes chromatin structure by altering DNA-histone contacts within a nucleosome, leading eventually to a change in nucleosome position, thus facilitating or repressing binding of gene-specific transcription factors. {ECO:0000269|PubMed:16055636}. |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AK102453 | 5e-48 | AK102453.1 Oryza sativa Japonica Group cDNA clone:J033093P09, full insert sequence. | |||
GenBank | AL606595 | 5e-48 | AL606595.4 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBa0044K18, complete sequence. | |||
GenBank | AP014960 | 5e-48 | AP014960.1 Oryza sativa Japonica Group DNA, chromosome 4, cultivar: Nipponbare, complete sequence. | |||
GenBank | CP012612 | 5e-48 | CP012612.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 4 sequence. | |||
GenBank | CR855151 | 5e-48 | CR855151.1 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSIGBa0158F13, complete sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_020155759.1 | 4e-57 | SWI/SNF complex subunit SWI3A-like | ||||
Swissprot | Q8W475 | 2e-14 | SWI3A_ARATH; SWI/SNF complex subunit SWI3A | ||||
TrEMBL | A0A453C7P4 | 8e-61 | A0A453C7P4_AEGTS; Uncharacterized protein | ||||
STRING | Traes_2AL_8417C5F8B.1 | 2e-63 | (Triticum aestivum) | ||||
STRING | Traes_2DL_7034372AC.1 | 7e-64 | (Triticum aestivum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP2894 | 3 | 4 |
Publications ? help Back to Top | |||
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