PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Traes_2DL_6CD5A5CD9.2
Organism
Triticum aestivum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
Family MIKC_MADS
Protein Properties Length: 241aa    MW: 28064.3 Da    PI: 8.8605
Description MIKC_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Traes_2DL_6CD5A5CD9.2genomeIWGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF83.11.7e-26959151
                           S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS
                 SRF-TF  1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51
                           k+ien++ rqvtfskRr g+lKKA+EL +LCda+v vi+fs +gk+yey+s
  Traes_2DL_6CD5A5CD9.2  9 KKIENTTSRQVTFSKRRMGLLKKANELAILCDAQVGVIVFSGSGKMYEYAS 59
                           68***********************************************86 PP
2K-box59.41.5e-20851621491
                  K-box  14 aeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqeen 91 
                            +++  +e++++k+e + L+   R+++GedL+sL+l++  +Leqq+e sl k+R +K++ll +q+ e++++e  ++e++
  Traes_2DL_6CD5A5CD9.2  85 QQKIIHEMTRMKDESNRLKIIMRQYMGEDLGSLTLQDVSNLEQQIEFSLYKVRLRKQQLLDQQLLEMRQREMHMSEDQ 162
                            678889******************************************************************999875 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004324.0E-39160IPR002100Transcription factor, MADS-box
PROSITE profilePS5006631.314161IPR002100Transcription factor, MADS-box
CDDcd002655.57E-39276No hitNo description
SuperFamilySSF554554.84E-30279IPR002100Transcription factor, MADS-box
PRINTSPR004044.1E-28323IPR002100Transcription factor, MADS-box
PROSITE patternPS003500357IPR002100Transcription factor, MADS-box
PfamPF003193.1E-251057IPR002100Transcription factor, MADS-box
PRINTSPR004044.1E-282338IPR002100Transcription factor, MADS-box
PRINTSPR004044.1E-283859IPR002100Transcription factor, MADS-box
PfamPF014863.7E-1782161IPR002487Transcription factor, K-box
PROSITE profilePS5129712.56185174IPR002487Transcription factor, K-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 241 aa     Download sequence    Send to blast
MGRGKVELKK IENTTSRQVT FSKRRMGLLK KANELAILCD AQVGVIVFSG SGKMYEYASP  60
PWRIANIFDR YLKAPSTRFD EMDVQQKIIH EMTRMKDESN RLKIIMRQYM GEDLGSLTLQ  120
DVSNLEQQIE FSLYKVRLRK QQLLDQQLLE MRQREMHMSE DQGSSYMFHM NPARDQPGQP  180
ADVMNPKLFP LWDVGDQIYG QDAESSMTAL KLSPQLQEYK LQPVQPNLQE GNLHGYVLRL  240
W
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6byy_A1e-16160160MEF2 CHIMERA
6byy_B1e-16160160MEF2 CHIMERA
6byy_C1e-16160160MEF2 CHIMERA
6byy_D1e-16160160MEF2 CHIMERA
6bz1_A2e-16160160MEF2 CHIMERA
6bz1_B2e-16160160MEF2 CHIMERA
6bz1_C2e-16160160MEF2 CHIMERA
6bz1_D2e-16160160MEF2 CHIMERA
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020180820.11e-179MADS-box transcription factor 31-like
SwissprotQ84NC28e-92MAD31_ORYSJ; MADS-box transcription factor 31
TrEMBLR7W6H91e-178R7W6H9_AEGTA; MADS-box transcription factor 31
STRINGTraes_2DL_6CD5A5CD9.21e-180(Triticum aestivum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP185037100
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G23260.38e-42MIKC_MADS family protein
Publications ? help Back to Top
  1. Brenchley R, et al.
    Analysis of the bread wheat genome using whole-genome shotgun sequencing.
    Nature, 2012. 491(7426): p. 705-10
    [PMID:23192148]
  2. Schilling S, et al.
    Non-canonical structure, function and phylogeny of the Bsister MADS-box gene OsMADS30 of rice (Oryza sativa).
    Plant J., 2015. 84(6): p. 1059-72
    [PMID:26473514]