PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Traes_2DL_6ACC34788.2
Organism
Triticum aestivum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
Family C3H
Protein Properties Length: 309aa    MW: 32324.3 Da    PI: 10.2334
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Traes_2DL_6ACC34788.2genomeIWGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH25.22.8e-08101126227
                            -S---SGGGGTS--TTTTT-SS-SSS CS
                zf-CCCH   2 ktelCrffartGtCkyGdrCkFaHgp 27 
                            kt+ C  +     Ck+Gd+C+FaHg+
  Traes_2DL_6ACC34788.2 101 KTRMCTKYNTAEGCKFGDKCHFAHGE 126
                            89**********************96 PP
2zf-CCCH38.32.2e-12275300127
                            --S---SGGGGTS--TTTTT-SS-SSS CS
                zf-CCCH   1 yktelCrffartGtCkyGdrCkFaHgp 27 
                            ykt++C +f++ GtC +G+rC+FaHg+
  Traes_2DL_6ACC34788.2 275 YKTKICENFLK-GTCTFGERCHFAHGE 300
                            9**********.*************96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS501037.0563968IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.107.8E-45165IPR000571Zinc finger, CCCH-type
PfamPF146080.615565No hitNo description
SMARTSM003560.1299126IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010313.65799127IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.101.4E-13100129IPR000571Zinc finger, CCCH-type
SuperFamilySSF902294.06E-8100130IPR000571Zinc finger, CCCH-type
PfamPF006429.8E-5101126IPR000571Zinc finger, CCCH-type
SuperFamilySSF547915.93E-14167243IPR004088K Homology domain, type 1
Gene3DG3DSA:3.30.1370.107.3E-15171242IPR004088K Homology domain, type 1
SMARTSM003221.1E-10172242IPR004087K Homology domain
PROSITE profilePS5008413.754173237IPR004088K Homology domain, type 1
PfamPF000132.9E-10175238IPR004088K Homology domain, type 1
CDDcd001051.87E-12175233No hitNo description
Gene3DG3DSA:4.10.1000.103.3E-14273304IPR000571Zinc finger, CCCH-type
SuperFamilySSF902296.02E-9273304IPR000571Zinc finger, CCCH-type
SMARTSM003568.4E-9274300IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010317.619274301IPR000571Zinc finger, CCCH-type
PfamPF006428.4E-10275300IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003723Molecular FunctionRNA binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 309 aa     Download sequence    Send to blast
PPSAAPHSAS AKPQARVSAS TRRARHGCRR PQEIPAGVRQ RRRRRREALE STVGCPFGEG  60
CHFAHFVPGG YQAVSKSHSL GHAAVSAPSR APADHAASGV KTRMCTKYNT AEGCKFGDKC  120
HFAHGERELG RAPSSYMSQE SSYAPPMGGR YGGRHEPPPP ASMGPPAGNF GASSTCKVSV  180
DAALAGGIIG KGGVNTKQIC RITGVKLSIR DHESNPDLKN IELEGSFDQI KQANDMVRDL  240
IASISASTPS KNPAGAAAPA VRGGGGGGPG GRSNYKTKIC ENFLKGTCTF GERCHFAHGE  300
TEQRKGAAV
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
13845RQRRRRRR
23945QRRRRRR
34045RRRRRR
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK2506930.0AK250693.1 Hordeum vulgare subsp. vulgare cDNA clone: FLbaf85e04, mRNA sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020173136.10.0zinc finger CCCH domain-containing protein 31-like
SwissprotQ7XPK11e-116C3H31_ORYSJ; Zinc finger CCCH domain-containing protein 31
TrEMBLA0A453D3N50.0A0A453D3N5_AEGTS; Uncharacterized protein
STRINGTraes_2DL_6ACC34788.20.0(Triticum aestivum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP125438127
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G12130.12e-51C3H family protein
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]
  2. Brenchley R, et al.
    Analysis of the bread wheat genome using whole-genome shotgun sequencing.
    Nature, 2012. 491(7426): p. 705-10
    [PMID:23192148]