PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Traes_2DL_640A09678.2
Organism
Triticum aestivum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
Family GATA
Protein Properties Length: 445aa    MW: 48205.5 Da    PI: 7.2936
Description GATA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Traes_2DL_640A09678.2genomeIWGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GATA49.75.2e-16842135
                   GATA  1 CsnCgttkTplWRrgpdgnktLCnaCGlyyrkkgl 35
                           C +Cg+t+TplWR+gp  ++ LCnaCG ++r +g+
  Traes_2DL_640A09678.2  8 CGHCGVTSTPLWRNGPPDKPVLCNACGSRWRIRGT 42
                           9***************55555**********9987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004014.9E-11256IPR000679Zinc finger, GATA-type
SuperFamilySSF577163.85E-11547No hitNo description
CDDcd002025.58E-15776No hitNo description
PfamPF003208.2E-14842IPR000679Zinc finger, GATA-type
PROSITE profilePS5011411.78861IPR000679Zinc finger, GATA-type
Gene3DG3DSA:3.30.50.105.7E-12842IPR013088Zinc finger, NHR/GATA-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0008270Molecular Functionzinc ion binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 445 aa     Download sequence    Send to blast
MAKKEGPCGH CGVTSTPLWR NGPPDKPVLC NACGSRWRIR GTLVNYTPAH RREDTGASEA  60
RPDKLKLKGQ KQPKKRPNRS IVKDEPWSDQ NFWKMGNADT SNRSGSGSAV SYSESCAPYG  120
SIDASEIAGS AQSHALESLV PSRKRSCVSR PKPSALEALV DDLNSIMHEE QLYCLSAGST  180
EEDLLYHSET PAGSFEIGYG SVLLRHPNTK SEEEESEANS VPADTKSYIT SESYSGCASF  240
IAHSEIKGAS NSNAASEKLK WSPMQTHDSA RRDELHCSNQ HILESADSAL EDNCSKEVGG  300
LTKSSMRSLK RPYESQQQSF TDAEVRGGTM RLASSRSRAM ASCQLRRSAF LPKSGNATGA  360
AAAPLNLFML APDKLSSMLN PSDKDSDQDS LLLEVPRNAR HPEAELLLCC PPPSQLSSVT  420
VTAASPPSNH SPGSASDQLR NRHQW
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK3768370.0AK376837.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv3137I18.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020175110.10.0GATA transcription factor 26-like isoform X1
RefseqXP_020175118.10.0GATA transcription factor 26-like isoform X1
TrEMBLA0A3B6DR510.0A0A3B6DR51_WHEAT; Uncharacterized protein
STRINGTraes_2DL_640A09678.20.0(Triticum aestivum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP44243464
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G17570.38e-51GATA transcription factor 26
Publications ? help Back to Top
  1. Brenchley R, et al.
    Analysis of the bread wheat genome using whole-genome shotgun sequencing.
    Nature, 2012. 491(7426): p. 705-10
    [PMID:23192148]