PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Traes_2DL_617DB5FC6.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
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Family | FAR1 | ||||||||
Protein Properties | Length: 65aa MW: 7384.54 Da PI: 10.9739 | ||||||||
Description | FAR1 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | FAR1 | 36.2 | 2e-11 | 3 | 44 | 49 | 90 |
FAR1 49 ekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHela 90 e+++r+ ++tr+gC+a+++vk + +++++++l ++HnH l+ Traes_2DL_617DB5FC6.1 3 ERKKRNVKVTRCGCNAHIVVKWCSGNTYNISSLIEHHNHGLV 44 6889999********************************997 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF03101 | 4.3E-9 | 2 | 44 | IPR004330 | FAR1 DNA binding domain |
Sequence ? help Back to Top |
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Protein Sequence Length: 65 aa Download sequence Send to blast |
SNERKKRNVK VTRCGCNAHI VVKWCSGNTY NISSLIEHHN HGLVSPDKVI KSKRRVSEKA 60 KNKLS |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_020161160.1 | 6e-36 | protein FAR1-RELATED SEQUENCE 7-like | ||||
TrEMBL | A0A2X0S7T1 | 8e-35 | A0A2X0S7T1_WHEAT; Uncharacterized protein | ||||
STRING | Traes_2DL_617DB5FC6.1 | 5e-39 | (Triticum aestivum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP15006 | 9 | 15 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G38180.1 | 2e-08 | FAR1-related sequence 5 |
Publications ? help Back to Top | |||
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