PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Traes_2DL_5A0300CE0.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
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Family | MYB | ||||||||
Protein Properties | Length: 142aa MW: 15816.2 Da PI: 10.3437 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 55.6 | 1.2e-17 | 15 | 62 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 +g+WT+eEd+llvd+v+ +g+W+ ++ g++R++k+c++rw +yl Traes_2DL_5A0300CE0.1 15 KGPWTPEEDKLLVDYVQANAPGNWRMLPKLAGLNRCGKSCRLRWTNYL 62 79********************************************97 PP | |||||||
2 | Myb_DNA-binding | 54.7 | 2.3e-17 | 68 | 112 | 1 | 47 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 rg++T+eE++ ++++++ G++ W+ Ia+ ++ gRt++++k++w++ Traes_2DL_5A0300CE0.1 68 RGPFTPEEHKSILQLHAIVGNK-WSMIAAQLP-GRTDNEIKNYWNTN 112 89********************.*********.***********986 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51294 | 17.591 | 10 | 62 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 4.03E-32 | 12 | 109 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 9.5E-13 | 14 | 64 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 2.9E-15 | 15 | 62 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 3.7E-24 | 16 | 69 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 7.47E-10 | 17 | 62 | No hit | No description |
PROSITE profile | PS51294 | 25.965 | 63 | 117 | IPR017930 | Myb domain |
SMART | SM00717 | 5.2E-15 | 67 | 115 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 2.1E-15 | 68 | 113 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 2.18E-11 | 70 | 113 | No hit | No description |
Gene3D | G3DSA:1.10.10.60 | 6.5E-27 | 70 | 117 | IPR009057 | Homeodomain-like |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 142 aa Download sequence Send to blast |
MGRTPCCESR QGLKKGPWTP EEDKLLVDYV QANAPGNWRM LPKLAGLNRC GKSCRLRWTN 60 YLRPDIKRGP FTPEEHKSIL QLHAIVGNKW SMIAAQLPGR TDNEIKNYWN TNLKKQLRQA 120 ALVGEKHHSA LASPGASAGA GC |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1h8a_C | 4e-29 | 13 | 117 | 25 | 128 | MYB TRANSFORMING PROTEIN |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor that may function in salt stress response. {ECO:0000305|PubMed:26139822}. |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Induced by salt stress. {ECO:0000269|PubMed:26139822}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AK108621 | 1e-138 | AK108621.1 Oryza sativa Japonica Group cDNA clone:002-147-D04, full insert sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_020156867.1 | 1e-104 | myb-related protein Myb4-like | ||||
Swissprot | Q9M0Y5 | 2e-62 | MYB74_ARATH; Transcription factor MYB74 | ||||
TrEMBL | A0A1D5UP18 | 1e-102 | A0A1D5UP18_WHEAT; Uncharacterized protein | ||||
TrEMBL | A0A453CFP2 | 1e-102 | A0A453CFP2_AEGTS; Uncharacterized protein | ||||
STRING | Traes_2DL_5A0300CE0.1 | 1e-102 | (Triticum aestivum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP5409 | 31 | 57 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G05100.1 | 3e-64 | myb domain protein 74 |
Publications ? help Back to Top | |||
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