PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Traes_2DL_56ED5AE04.2 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
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Family | MYB_related | ||||||||
Protein Properties | Length: 79aa MW: 9265.98 Da PI: 10.8648 | ||||||||
Description | MYB_related family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 21.5 | 5.6e-07 | 29 | 50 | 26 | 48 |
HHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 26 tIartmgkgRtlkqcksrwqkyl 48 +Iar ++ gR +kqc++rw+++l Traes_2DL_56ED5AE04.2 29 LIARSLP-GRIGKQCQERWHNHL 50 69*****.*************97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF46689 | 1.33E-7 | 26 | 54 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 1.02E-4 | 29 | 50 | No hit | No description |
Gene3D | G3DSA:1.10.10.60 | 2.7E-9 | 29 | 55 | IPR009057 | Homeodomain-like |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 79 aa Download sequence Send to blast |
MSHGLFIVFL RTLMGWVCMQ RSKDQQNGLI ARSLPGRIGK QCQERWHNHL NPEYREMLGL 60 LRNMHKLMPI GYMGINGQK |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | HQ236494 | 3e-55 | HQ236494.1 Triticum aestivum MYB3R transcription factor (MYB3R1) mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
TrEMBL | A0A446MKM7 | 2e-45 | A0A446MKM7_TRITD; Uncharacterized protein | ||||
STRING | Traes_2DL_56ED5AE04.2 | 3e-52 | (Triticum aestivum) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G02320.2 | 8e-13 | myb domain protein 3r-5 |
Publications ? help Back to Top | |||
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